PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02235.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 159aa    MW: 18542 Da    PI: 8.4866
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02235.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-173680247
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             g+W +eEd +l +a +++  g+W++Ia++++ +Rt++qc+ rw ++
  Rsa1.0_02235.1_g00003.1 36 GKWAKEEDAKLREAMAEHEIGNWSKIASHVP-RRTDNQCRRRWMQL 80
                             89*****************************.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-61736IPR009057Homeodomain-like
SuperFamilySSF466892.83E-231785IPR009057Homeodomain-like
PROSITE profilePS5129424.6773085IPR017930Myb domain
SMARTSM007171.4E-133483IPR001005SANT/Myb domain
PfamPF002498.7E-163680IPR001005SANT/Myb domain
CDDcd001677.57E-143780No hitNo description
Gene3DG3DSA:1.10.10.607.1E-193781IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEKDASPYQN EDREIQTSTQ CREKWANYLD PNVNHGKWAK EEDAKLREAM AEHEIGNWSK  60
IASHVPRRTD NQCRRRWMQL YPHQVPLLQE ATRLRKQATV GNFVDRESQR PALLECKFLA  120
LPEIPLEPEP ETVGLKKKKR KARTKKSDAE CESEANSVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02235.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489681.14e-71PREDICTED: snRNA-activating protein complex subunit 4 isoform X1
RefseqXP_018489683.13e-71PREDICTED: snRNA-activating protein complex subunit 4 isoform X2
RefseqXP_018489684.13e-72PREDICTED: myb-like protein L isoform X3
TrEMBLA0A397ZEI17e-67A0A397ZEI1_BRACM; Uncharacterized protein
TrEMBLA0A3P5ZJI71e-65A0A3P5ZJI7_BRACM; Uncharacterized protein
STRINGBra022280.1-P2e-66(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.29e-43myb domain protein 4r1