PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02283.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 686aa    MW: 78560.3 Da    PI: 7.7033
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02283.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.7e-053513841755
                              HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              N++f+ Lr+++P+ +        +K eiL  +++Y+++L+
  Rsa1.0_02283.1_g00004.1 351 NEKFSVLRTMVPTvN------EIDKEEILNNTIKYLQELE 384
                              9************55......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.8E-4623209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.737334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-6344389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-8349397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-8351394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:2.60.40.1502.6E-8520632IPR000008C2 domain
PfamPF001683.0E-7520601IPR000008C2 domain
SuperFamilySSF495622.65E-10520632IPR000008C2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MSLTKDDGVE AARGRSSRRN SLLSKQLAVA VKSVQWSYAI FWSSSPTQSG VLEWGEGCYN  60
GEMKKRKKRN EAHYKHVLQR SSQLRTLYLC MREGDSTTTI STTHDDDDYQ NCNSRSMMLS  120
PDDLSDEEWY YIVSMSYVFS PSQCLPGRTL ATGETIWLCN AQYADSKFFS RSLLARTVVC  180
FPYLGGVIEL GVTELISEDP SLLQHIKSCL LETSKPDCSS KNFFAHQDND DDDKKKNHEI  240
QFGISDLMLD EDLHYKTTVS TLLKYASDNN SHHRQPPDLA SSNSGSSFLR WKQPDSNLLL  300
KPSNLKPLRQ NVLRKILHDV PLMHSVDAKR MLPNNTFGLN QDDPSVKRKE NEKFSVLRTM  360
VPTVNEIDKE EILNNTIKYL QELEERVEEL ESCMGSVNFA ERKRKSLNDS VLIEETSGNY  420
DDSTNIDGNS GETEQVTSFR DETRLRVKLN ETDVVMEVRC FYRDYIVADI METLSKLHMD  480
AFSVRSHTLN GFLTLNLKAK LRGAAVASVG MIKRELRRVI GSPVYYVLLQ CGTKEYRSKL  540
SKGDHDKALW NQKFVFDFPM SQWKKLTHIK FRIMDKELFK DGGFVGETII DLKGILTEGG  600
DRGYMEVKPT PYNVVLDDDT FKGVLKLGFR FTAADKLRRK AWEQKIDGKN SEEAMNSPIL  660
SLMKLPLLRL FLYCFQKTTK YQLKDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A9e-122320648227Transcription factor MYC3
4ywc_A9e-122320648227Transcription factor MYC3
4ywc_B9e-122320648227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02283.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936641e-176AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBankAF2516971e-176AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464597.10.0PREDICTED: transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A3P5ZT890.0A0A3P5ZT89_BRACM; Uncharacterized protein
STRINGBra000970.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein