PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02349.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NZZ/SPL

Protein Properties

Length: 267aa MW: 28911.1 Da PI: 5.3806

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02349.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	283.2	8.7e-87	1	267	1	314
NOZZLE 1 matslffmstdqnsvrnpnellrntrlvvnssgeirte.tkksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvva. 84 m t lff t+q npnel+rnt+lv n s e te ++ks g pgskt++ k+kkp+lrgmgva+ler +ieeekk+++ a Rsa1.0_02349.1_g00006.1 1 MVTPLFFTPTNQ----NPNELMRNTYLV-NDSSESLTEpPQKSSGGEPGSKTGEPKRKKPALRGMGVARLERLRIEEEKKNMIEAq 81 7899*99998....6*******.88888899989**************************************6551 PP NOZZLE 85 tvgdtssvaaisntatrlpvpvdrgvvlqgfps.slgs....srilcggvgsgqvmidpvispwgfvetsatthelssisnpqmyn 165 + gdt aa++ +at p d+gvvlqgfps g+ s +l ggvgsgq+ pv p gfve s+ i+npq+yn Rsa1.0_02349.1_g00006.1 82 GGGDTL--AASP-NATPSP---DPGVVLQGFPSyGTGGpntrSMFLGGGVGSGQI---PVYPPLGFVEPSS-------IPNPQVYN 151 667776..7666.588889...*******644547777889*****9...8899*9987.......****** PP NOZZLE 166 assnnrcdtcfkkkrldgdqnnvvrsngggfskytmipppmngydeyllqsdhhqrsqgflydqriaraasvsaasasinpyfnea 251 s n+ cd cfkk+r++ dq nvvrsngggfs yt++p +ll++d qr qgf+yd+riar ++ ++a Rsa1.0_02349.1_g00006.1 152 PSNNH-CDVCFKKQRINEDQ-NVVRSNGGGFSEYTVFP--------HLLPPD--QRNQGFFYDHRIARYSAPPSA----------- 214 9999.***********.***********99........59..**********9833322........... PP NOZZLE 252 tnltgsreefgsvlegnprngsrgvkeyeffpgkydervskvakvaslvgdcspn..tidlslkl 314 gs+ee+ s nprn ++ vkey+ffp v v+++vgdcspn tidl+lkl Rsa1.0_02349.1_g00006.1 215 PTNQGSMEELWSG---NPRNETGDVKEYDFFP---------VSSVSTSVGDCSPNtsTIDLTLKL 267 234699885...************.........56799*****999***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	6.9E-86	6	267	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MVTPLFFTPT NQNPNELMRN TYLVNDSSES LTEPPQKSSG GEPGSKTGEP KRKKPALRGM 60 GVARLERLRI EEEKKNMIEA QGGGDTLAAS PNATPSPDPG VVLQGFPSYG TGGPNTRSMF 120 LGGGVGSGQI PVYPPLGFVE PSSIPNPQVY NPSNNHCDVC FKKQRINEDQ NVVRSNGGGF 180 SEYTVFPHLL PPDQRNQGFF YDHRIARYSA PPSAPTNQGS MEELWSGNPR NETGDVKEYD 240 FFPVSSVSTS VGDCSPNTST IDLTLKL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator of sporocyte development (PubMed:10465788). Acts as an adapter-like transcriptional repressor recruiting TPL/TPR corepressors to inhibit TCP transcription factors (PubMed:25378179). Required for nucellus and embryo sac development (PubMed:10500234). Plays a central role in patterning both the proximal-distal and the adaxial-abaxial axes during ovule development (PubMed:12183381). Involved in establishing the prospective chalaza of the ovule and in controlling the cell number and the length of the funiculus, and is required for the development of the integuments (PubMed:10976054). Required, with BEL1, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). Involved in controlling stamen identity (PubMed:19726570). May also regulate the morphology of lateral organs by repressing auxin production (PubMed:18557819). {ECO:0000269\|PubMed:10465788, ECO:0000269\|PubMed:10500234, ECO:0000269\|PubMed:10976054, ECO:0000269\|PubMed:12183381, ECO:0000269\|PubMed:18557819, ECO:0000269\|PubMed:19726570, ECO:0000269\|PubMed:22786869, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02349.1_g00006.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor AGAMOUS (PubMed:15254538). Regulated by ATXR3/SDG2 via chromatin methylation (PubMed:21037105). Triggered by TGA9 AND TGA10 in anthers (PubMed:20805327). {ECO:0000269\|PubMed:15254538, ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:21037105}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482197.1	1e-152	PREDICTED: protein SPOROCYTELESS-like
Swissprot	O81836	1e-78	SPL_ARATH; Protein SPOROCYTELESS
TrEMBL	A0A397L6W6	1e-122	A0A397L6W6_BRACM; Uncharacterized protein
STRING	Bo7g111360.1	1e-121	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13435	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27330.1	2e-73	sporocyteless (SPL)

Publications ? help Back to Top
Armenta-Medina A,Huanca-Mamani W,Sanchez-León N,Rodríguez-Arévalo I,Vielle-Calzada JP Functional analysis of sporophytic transcripts repressed by the female gametophyte in the ovule of Arabidopsis thaliana. PLoS ONE, 2013. 8(10): p. e76977 [PMID:24194852] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192] Zhao L, et al. Comparative expression profiling reveals gene functions in female meiosis and gametophyte development in Arabidopsis. Plant J., 2014. 80(4): p. 615-28 [PMID:25182975] Yuan L,Sundaresan V Spore formation in plants: sporocyteless and more. Cell Res., 2015. 25(1): p. 7-8 [PMID:25512340] Picó S,Ortiz-Marchena MI,Merini W,Calonje M Deciphering the Role of POLYCOMB REPRESSIVE COMPLEX1 Variants in Regulating the Acquisition of Flowering Competence in Arabidopsis. Plant Physiol., 2015. 168(4): p. 1286-97 [PMID:25897002] Mao Y, et al. Development of germ-line-specific CRISPR-Cas9 systems to improve the production of heritable gene modifications in Arabidopsis. Plant Biotechnol. J., 2016. 14(2): p. 519-32 [PMID:26360626] Rojas-Gracia P, et al. The parthenocarpic hydra mutant reveals a new function for a SPOROCYTELESS-like gene in the control of fruit set in tomato. New Phytol., 2017. 214(3): p. 1198-1212 [PMID:28134991] Zhao F, et al. Phosphorylation of SPOROCYTELESS/NOZZLE by the MPK3/6 Kinase Is Required for Anther Development. Plant Physiol., 2017. 173(4): p. 2265-2277 [PMID:28209842] Bi H,Fan W,Zhang P C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis. Front Plant Sci, 2017. 8: p. 1689 [PMID:29021807]