PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02350.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 123aa    MW: 13893.6 Da    PI: 8.6028
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02350.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof102.91.9e-323194261
                   zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGal....rnvPvGggrrknkks 61
                             ++k+l+cprC+ ++tkfCyynny+ sqPr+fC++C+ryWt GG++    r vPvG+g  knk +
  Rsa1.0_02350.1_g00004.1 31 PDKILPCPRCNRADTKFCYYNNYNASQPRHFCRNCQRYWTSGGSMrmtmRTVPVGSGHHKNKGW 94
                             78999**************************************86222268**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-252892IPR003851Zinc finger, Dof-type
PfamPF027019.1E-283392IPR003851Zinc finger, Dof-type
PROSITE profilePS5088423.573593IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MNNQSAPDNG DEITTTATTS EEKTTDNLKE PDKILPCPRC NRADTKFCYY NNYNASQPRH  60
FCRNCQRYWT SGGSMRMTMR TVPVGSGHHK NKGWVQVDGF LQTITCTSIP RILTVTIAID  120
KNS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02350.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893857e-51AC189385.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB052E19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174001.21e-40Dof-type zinc finger DNA-binding family protein
RefseqXP_020866527.11e-40dof zinc finger protein DOF1.3
SwissprotQ9LQX41e-41DOF13_ARATH; Dof zinc finger protein DOF1.3
TrEMBLA0A178W5Q65e-39A0A178W5Q6_ARATH; Uncharacterized protein
TrEMBLD7KQL65e-39D7KQL6_ARALL; Dof-type zinc finger domain-containing protein
STRINGBostr.12659s0320.1.p6e-41(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26790.11e-38Dof family protein