PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02405.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 164aa    MW: 18066.5 Da    PI: 6.3526
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02405.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41e-142401149
                             HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             vtf+kR+ngi  K +ELSvLC+a+v  +i+s +gk +++
  Rsa1.0_02405.1_g00006.1  2 VTFCKRKNGIYTKLSELSVLCGADVGFLIYSGSGKPFTF 40
                             9**********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003199.4E-17140IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.142144IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-8243IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-17257IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-8621IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-82142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MVTFCKRKNG IYTKLSELSV LCGADVGFLI YSGSGKPFTF GSPSFDVVAQ RFLHGNHHPG  60
VTSGEGNSSL SSMIVDAHKK MKVDELCKNL NNLMEIKTDA EEEKLKMGEA AYASSLPVKS  120
TDEEEAKQLL RRYEEFYEEL CEVAAAKIRG RYDASTSASF LPHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02405.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474462.11e-119PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_018474473.11e-119PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A078GM391e-85A0A078GM39_BRANA; BnaA09g26550D protein
STRINGBo5g061120.19e-84(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.13e-35AGAMOUS-like 64