PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02405.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 124aa    MW: 13803.5 Da    PI: 4.666
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02405.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.4e-131381249
                             HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             tfskR+ngi  K +ELS+LC+a+v  +++s +gk +++
  Rsa1.0_02405.1_g00007.1  1 TFSKRKNGIYNKLSELSILCGADVGFLLYSGSGKPFTF 38
                             9*********************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.554142IPR002100Transcription factor, MADS-box
PfamPF003197.8E-16138IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-6141IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.16E-15156IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-8419IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-81940IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
TFSKRKNGIY NKLSELSILC GADVGFLLYS GSGKPFTFGS PSFDELCKNL NNLMEIQADA  60
EEEKLKMGEA AYAPSLPMKS TDEEEVKQLL RRYEEFYEEL CEVAAAKIRG RYDASASSSF  120
PPHG
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02405.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474457.15e-78PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A078GM393e-57A0A078GM39_BRANA; BnaA09g26550D protein
STRINGBo5g061120.11e-55(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.14e-23AGAMOUS-like 64