PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02422.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 294aa MW: 33088 Da PI: 8.263

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02422.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.9	3.1e-17	53	113	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 + R+++++eq+++Le+ F++ +p +ee++++ ++l ++ ++ V++WFqNr+ + k+ Rsa1.0_02422.1_g00001.1 53 KLRWNPKPEQIRILEAIFNSgMVNPPREEIRRIRAQLqeygQVGDASVFYWFQNRKSRSKN 113 78***************99***********************************995 PP
2	Wus_type_Homeobox	107.7	6.7e-35	53	114	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 + RW+P+peQi+iLe++++sG+++P++eei+ri+a+L+eyG+++d+ VfyWFQNrk+R+++k Rsa1.0_02422.1_g00001.1 53 KLRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDASVFYWFQNRKSRSKNK 114 78**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-6	33	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.463	49	114	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-11	50	117	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-7	51	118	IPR001356	Homeobox domain
CDD	cd00086	1.79E-7	52	114	No hit	No description
Pfam	PF00046	6.3E-15	53	112	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MASSNRHWPS MFKSKPHHHQ WQHDINSPLL PSSASHRSSP FSGCEVERSP EPKLRWNPKP 60 EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDASV FYWFQNRKSR SKNKLRLLHK 120 HSLSQPQPSS SSSSSSSKST KPQKNKDTNN NNLSLGGSQM MGMFPSEDAL PFPVSTAVAF 180 EGINVSSQLG FLSGDMKPAP PTVEPCTDYL LSEIMNSNVI YGTYHHQHLS EEEYEEMRMK 240 MLQQPQPYAT TSNQITSYNN NNIILHVPPI TSTTTATSDP LDIVPSTDQL QVQG

Functional Description ? help Back to Top
Source	Description
UniProt	Homeodomain transcription factor required for meristem growth and early development (PubMed:15753038). Promotes cell proliferation and prevents premature differentiation in meristematic tissues during postembryonic development (PubMed:15753038). Essential for maintaining tissue growth during embryogenesis (PubMed:17706632). May act by repressing TSS to promote meristematic proliferation (PubMed:21185286). Involved in the transcriptional activation of a subset of cytokinin response factors (PubMed:20110319). May act as a negative regulator of cytokinin signaling in the dark (PubMed:21057190). {ECO:0000269\|PubMed:15753038, ECO:0000269\|PubMed:17706632, ECO:0000269\|PubMed:20110319, ECO:0000269\|PubMed:21057190, ECO:0000303\|PubMed:21185286}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02422.1_g00001.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2. {ECO:0000269\|PubMed:21316593}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY251401	1e-115	AY251401.1 Arabidopsis thaliana WOX9 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018475538.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like
Swissprot	Q6X7J4	1e-130	WOX9_ARATH; WUSCHEL-related homeobox 9
TrEMBL	A0A397ZVQ3	1e-158	A0A397ZVQ3_BRACM; Uncharacterized protein
STRING	Bra022960.1-P	1e-159	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7206	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-121	homeobox-3

Publications ? help Back to Top
Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S Wuschel-related homeobox 8/9 is important for proper embryo patterning in the gymnosperm Norway spruce. J. Exp. Bot., 2014. 65(22): p. 6543-52 [PMID:25205582] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Blein T,Pautot V,Laufs P Combinations of Mutations Sufficient to Alter Arabidopsis Leaf Dissection. Plants (Basel), 2013. 2(2): p. 230-47 [PMID:27137374]