PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02438.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 256aa    MW: 28432.1 Da    PI: 7.8312
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02438.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.19.5e-151381802059
                              S-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY  20 fprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                r+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H+++
  Rsa1.0_02438.1_g00008.1 138 RRRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 180
                              4599*******999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007746.8E-11130181IPR003657WRKY domain
SuperFamilySSF1182903.66E-13137181IPR003657WRKY domain
PfamPF031068.0E-14137180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-14137180IPR003657WRKY domain
PROSITE profilePS5081111.221140182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEEVMSIIFR GLKLVDELKS SLQEKSPEAL STYLDEITKT FCDAKERLKI VLVIRNSETA  60
MNQLKPAIAA CSDQMLMQIE PGLMQEYWLR YGGSTSSQGT EAVTQRQLMA VKGDGGRNLM  120
ATERSGGSGS GSSTPRQRRR AYYRCTHQKL YNCPAKKQVQ RLNDDPFTFR VTYRGSHTCH  180
IYSTAPTIST AAPTAPIATT ATTSHPVDYG PFFDMAEAMM FGSSGSGANM DFIFPCNDPP  240
PHNHFYRRPE DGDGDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02438.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475020.10.0PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB51e-110WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A397ZZZ31e-144A0A397ZZZ3_BRACM; Uncharacterized protein
STRINGBra000202.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.21e-107WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]