PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02453.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 236aa    MW: 26489.9 Da    PI: 7.3474
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02453.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like94.49.1e-302474252
                  G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52
                             prlrWtpeLH++Fv+av+ LGG+ kAtPk +l++m+vkgLt++hvkSHLQk
  Rsa1.0_02453.1_g00005.1 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQK 74
                             8*************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-272077IPR009057Homeodomain-like
PROSITE profilePS5129411.1942080IPR017930Myb domain
SuperFamilySSF466898.24E-152478IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-212475IPR006447Myb domain, plants
PfamPF002495.9E-72574IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGKCGRSSDG GISGVRPYVR SPVPRLRWTP ELHRSFVHAV DLLGGQYKAT PKLVLKIMDV  60
KGLTISHVKS HLQKRVLHHL QEEEEDRTME ISFMTTCLNT QGMIVFLGFT LLASENRREQ  120
TSGTDNDDDD FLNITNMART KTFAGNGKSI KFQPHHFLEA QSMKSNMGNE HEEEELSLSL  180
SLNHPPINEQ RWRSNASSSL SEASEALSSP FTSRDCFASS KIDLNLNLSF PSLLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-182574453Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-182574453Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-182574352Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-182574352Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-182574352Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-182574352Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-182574453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-182574453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-182574453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-182574453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-182574453Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-182574453Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02453.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894991e-97AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482081.11e-110PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D95e-86MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078I5B91e-105A0A078I5B9_BRANA; BnaA06g09420D protein
TrEMBLA0A397YWD91e-105A0A397YWD9_BRACM; Uncharacterized protein
STRINGBo5g019810.11e-105(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.13e-78G2-like family protein