PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02524.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HSF
Protein Properties Length: 124aa    MW: 14442.3 Da    PI: 5.1881
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02524.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind44.73.7e-1443110570
                              HHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSB CS
             HSF_DNA-bind   5 klyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeek 70 
                               +ye+++d+++++++sw ++g+sf+v++e+ef  +vLp+   +  + ++SF+ + +  g++kv+++ +
  Rsa1.0_02524.1_g00003.1  43 DVYEMVNDPSTDSVVSWGDSGKSFIVWKESEFLGDVLPRclSYDYKDMTSFTTKFHALGYNKVEESVH 110
                              68*************************************667999******************98763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.4E-536124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-1339112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.7E-1641121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-1243121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MDRDSNDGRI PLSSLSCYKE MCRLADKDYH FSTIRRPPLL FRDVYEMVND PSTDSVVSWG  60
DSGKSFIVWK ESEFLGDVLP RCLSYDYKDM TSFTTKFHAL GYNKVEESVH WEYTANYLVR  120
GLLS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02524.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484778.14e-85PREDICTED: heat stress transcription factor A-4a-like
TrEMBLA0A3P6CSF33e-64A0A3P6CSF3_BRACM; Uncharacterized protein
TrEMBLM4DKG74e-64M4DKG7_BRARP; Uncharacterized protein
TrEMBLM4DKG94e-64M4DKG9_BRARP; Uncharacterized protein
STRINGBra016996.1-P6e-65(Brassica rapa)
STRINGBra016998.1-P6e-65(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.14e-16heat shock factor 1