PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02554.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

M-type_MADS

Protein Properties

Length: 82aa MW: 9158.54 Da PI: 11.3791

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02554.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	22.2	1.8e-07	9	37	1	29
S---SHHHHHHHHHHHHHHHHHHHHHHHH CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSv 29 k+ie qv f++Rr+ ++KKA+ LS+ Rsa1.0_02554.1_g00004.1 9 KKIEKANSLQVRFTNRRKVLMKKANHLSI 37 678899999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.7E-4	1	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.22E-9	1	37	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.451	1	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-6	10	37	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.1E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MGRGKIELKK IEKANSLQVR FTNRRKVLMK KANHLSISAT RTSPLSSSST PARYGYSAAD 60 HRLREQQQLL LCSSSQENGV VV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02554.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018437123.1	2e-21	PREDICTED: agamous-like MADS-box protein AGL18
Refseq	XP_018444266.1	1e-21	PREDICTED: agamous-like MADS-box protein AGL18
TrEMBL	A0A397YLY0	2e-17	A0A397YLY0_BRACM; Uncharacterized protein
TrEMBL	A0A3P6BJZ3	2e-17	A0A3P6BJZ3_BRACM; Uncharacterized protein
STRING	Bo6g072840.1	6e-18	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-08	AGAMOUS-like 15