PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02570.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 227aa MW: 25190.9 Da PI: 6.2171

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02570.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	33.8	7.3e-11	190	214	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 k+r+rWt++LH++Fve+v+ LGG++ Rsa1.0_02570.1_g00004.1 190 KTRIRWTQDLHDKFVECVNLLGGAD 214 68*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.7E-8	189	223	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MDNINYETSN ASQGSRLQLP PHPQPPQPFN LQDVNMIHYS QSPPLTIETF SGLTPYDDTE 60 NQPFSVQCSS SKPYLPLFHP CHHQASGSLS LDQSQSMVPM QHLEDQYLKP LYQRSCANDL 120 AATNASSASY SLSFEASQDP QELCRRTYSN SNVTQLNFTS SILPRFSSHS SFSTHGGSMA 180 SNSGAVIGNK TRIRWTQDLH DKFVECVNLL GGADSKLEAL KILQLYN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02570.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013715394.1	1e-114	myb family transcription factor PHL5-like
Refseq	XP_018510816.1	1e-114	PREDICTED: myb family transcription factor PHL5-like
Swissprot	Q0WVU3	1e-93	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	M4CYD1	1e-112	M4CYD1_BRARP; Uncharacterized protein
STRING	Bra009228.1-P	1e-113	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5476	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	1e-75	G2-like family protein