PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02570.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 128aa    MW: 14857 Da    PI: 8.4975
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02570.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like30.86.5e-101203655
                  G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                             m+ +gLt+ hvkSHLQkYR+
  Rsa1.0_02570.1_g00005.1  1 MDSEGLTIFHVKSHLQKYRI 20
                             999****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-8121IPR009057Homeodomain-like
PfamPF143791.3E-203380IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDSEGLTIFH VKSHLQKYRI AKYIPDSQEG SGVHIKEALQ LQLDIQRHLH EQLEIQRNLQ  60
LRIEEQGKQL KIMIEQQQKT KECVLKTPIA EVSLSHSDSG HSLLRQSQYK KPKPCCSQDM  120
ETVNSNQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02570.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2266443e-50AK226644.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-39-G11.
GenBankBT0126583e-50BT012658.1 Arabidopsis thaliana At5g06800 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013715394.17e-68myb family transcription factor PHL5-like
RefseqXP_018510816.17e-68PREDICTED: myb family transcription factor PHL5-like
SwissprotQ0WVU35e-45PHL5_ARATH; Myb family transcription factor PHL5
TrEMBLA0A397XNE62e-68A0A397XNE6_BRACM; Uncharacterized protein
STRINGBra009228.1-P3e-67(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54762748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.15e-45G2-like family protein