PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02570.1_g00006.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 204aa MW: 23398.5 Da PI: 8.1252

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02570.1_g00006.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.3	5.2e-26	77	127	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt +LH++Fve+v++L +AtPk+il+lm +gLt+++vkSHLQkYR+ Rsa1.0_02570.1_g00006.1 77 KTRIKWTADLHDKFVECVNNL----EATPKQILKLMRTDGLTIYQVKSHLQKYRT 127 68*****************....9**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.877	74	130	IPR017930	Myb domain
SuperFamily	SSF46689	8.24E-15	76	127	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.6E-19	77	128	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.6E-22	77	128	IPR009057	Homeodomain-like
Pfam	PF00249	4.4E-9	81	126	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MKFGRRYASD DALSHEMCSE HASNCCKCYD ISEIFSTETR QATSLSKQSS ECVETDISTE 60 PSKSSLASEF TSSSLIKTRI KWTADLHDKF VECVNNLEAT PKQILKLMRT DGLTIYQVKS 120 HLQKYRTQKH VQNSIQETSF KGQEADMEGS GIKEFMRLQD KVGKHLQEQL EIQRGLYLLV 180 EKQNKKTPRD DYISKTKELV NTVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	77	130	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	77	130	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	77	130	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	77	130	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	77	130	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	77	130	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	77	130	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	77	130	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02570.1_g00006.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444686.1	1e-149	PREDICTED: myb family transcription factor PHL5-like isoform X3
Swissprot	Q0WVU3	4e-31	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	A0A397XQ85	1e-106	A0A397XQ85_BRACM; Uncharacterized protein
STRING	Bra009230.1-P	1e-62	(Brassica rapa)
STRING	Bostr.10199s0037.1.p	6e-68	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19527	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	5e-32	G2-like family protein