PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02605.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 199aa    MW: 22486.9 Da    PI: 4.2199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02605.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-192070155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s+ykGVr +k +g+Wv+eIr p++   r r++lg+f+t+e+Aa+a +aa  +l+g
  Rsa1.0_02605.1_g00001.1 20 SKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSFDTPEKAARAFDAAQFCLRG 70
                             89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-202079IPR016177DNA-binding domain
CDDcd000181.26E-292080No hitNo description
PfamPF008472.7E-122070IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-292179IPR001471AP2/ERF domain
SMARTSM003807.7E-302184IPR001471AP2/ERF domain
PROSITE profilePS5103222.1152178IPR001471AP2/ERF domain
PRINTSPR003675.5E-102233IPR001471AP2/ERF domain
PRINTSPR003675.5E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVKKAMNEEE AEMRNSSMQS KYKGVRKRKW GKWVSEIRLP NSRERIWLGS FDTPEKAARA  60
FDAAQFCLRG RQSGFNFPDN PPSISGGRSL TPPEIREAAA RFANGQDDII ISVREEEESV  120
LSETRPESPS TSVSEVAMSS ATTLDYDLSF LETLPSDFGM FPSFDDFSDG FSGDQFTEVL  180
PVEDYGELIF DDSLFLWDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1519861280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12228KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02605.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0083902e-40AY008390.1 Arabidopsis thaliana ARF11/IAA22 gene, complete cds.
GenBankBT0061912e-40BT006191.1 Arabidopsis thaliana clone C00087 (K) putative AP2 domain transcription factor (At1g19210) mRNA, complete cds.
GenBankCP0026842e-40CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT29M82e-40AC069143.3 Sequence of BAC T29M8 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443056.11e-125PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF018
SwissprotQ9S7L51e-87ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLA0A397YRQ71e-120A0A397YRQ7_BRACM; Uncharacterized protein
TrEMBLM4DHA51e-120M4DHA5_BRARP; Uncharacterized protein
STRINGBra015882.1-P1e-120(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.19e-78ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]