PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02605.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 252aa    MW: 28024.3 Da    PI: 8.2356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02605.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.95.3e-1489133347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE++l++ + ++ G+g+Wk I++ + k Rt  q+ s+ qky
  Rsa1.0_02605.1_g00009.1  89 PWTEEEHKLFLLGLQKVGKGDWKGISKNFVKSRTSTQVASHAQKY 133
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.33182138IPR017930Myb domain
SuperFamilySSF466893.52E-1784139IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1785136IPR006447Myb domain, plants
SMARTSM007174.5E-1086136IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-1188133IPR009057Homeodomain-like
CDDcd001672.37E-989134No hitNo description
PfamPF002493.2E-1189133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MADGSSSCTS ESTVDGSCIS REIMLFGVRV VLDPMRKSVS LNNLSEYEQT EEIPKIMAED  60
EKNKTSSGYA SADEAVPITS SRERKRGVPW TEEEHKLFLL GLQKVGKGDW KGISKNFVKS  120
RTSTQVASHA QKYFLRRSNL NRRRRRSSLF DMTTDTVMPM KEDQVLVQEN TPQQEVNNFS  180
THPVMQVFPS GDNASGTQSY GHHLSSSNLI NLVPYTFQAR PEPISLSLTL ASSNLNEPSS  240
SRHSAFNTIG VA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00236DAPTransfer from AT1G74840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02605.1_g00009.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445545.11e-159PREDICTED: transcription factor MYB1R1-like
RefseqXP_018445564.11e-159PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B06e-56MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A0D3D0Q61e-120A0A0D3D0Q6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6GE641e-120A0A3P6GE64_BRAOL; Uncharacterized protein
STRINGBo6g119010.11e-121(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.11e-109MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]