PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02606.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 178aa    MW: 20751.4 Da    PI: 9.1646
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02606.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.92.2e-1368124561
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                              +r++r+ +NRe+ArrsR RKk++ieeL++ v++L   N+ L +++ +l +   +   
  Rsa1.0_02606.1_g00006.1  68 RRAKRMVSNRESARRSRVRKKKQIEELQQQVEQLMIMNHNLSEKVISLLESNHQILR 124
                              89****************************************998887776666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.5E-1264128IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.0E-1165121No hitNo description
PROSITE profilePS5021711.10566129IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.13E-1168120No hitNo description
PfamPF001703.6E-1268126IPR004827Basic-leucine zipper domain
CDDcd147025.56E-1669120No hitNo description
PROSITE patternPS0003607186IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MESSSVHRYH HCFDIFKGMP PQDDHNSTFL PNAKFHVPLQ SPNISTRSNN NRVHLNPNVY  60
EGAVPDERRA KRMVSNRESA RRSRVRKKKQ IEELQQQVEQ LMIMNHNLSE KVISLLESNH  120
QILRENSQLK EKASSFQLLM SEMLIPVRHV DGSSSISDRN PNHHLIGEDF EPGQHFLW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RRSRVRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02606.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482432.11e-129PREDICTED: basic leucine zipper 43
TrEMBLA0A3N6T4V53e-94A0A3N6T4V5_BRACR; Uncharacterized protein
STRINGBo7g098020.17e-94(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61852545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60830.15e-55basic leucine-zipper 70