PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02654.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 265aa MW: 29771.8 Da PI: 10.1083

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02654.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	65.6	2.2e-20	1	86	1	86
GAGA_bind 1 mdddgsrernkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 mdd ++ +g + ++++ ++ +q+ms+iaerda+i+ernla+se+k+avaerdmaflqrd+a+aern+a++erd++l al++ Rsa1.0_02654.1_g00004.1 1 MDDGRHKAP-HGqWMMQQQHQHQPSIKQVMSIIAERDAAIQERNLAISERKSAVAERDMAFLQRDTAIAERNNAIMERDSALSALQF 86 566555442.23122333444445667*******************************************************99986 PP
2	GAGA_bind	252.6	2.4e-77	89	264	146	300
GAGA_bind 146 ekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader......................skaekksidl.vlngvslDestl 208 e++k+k+++r ++pk++ a+k +k+++kvkke++d++ sk++++s+++ +ln+v +De+t+ Rsa1.0_02654.1_g00004.1 89 ESAKPKRGKRVRDPKTTPASKRG---TKNQRKVKKEKEDDDlskimfvktttlgyveeeeaagSKSDWRSQEMaGLNQVVYDETTM 171 55677777777777776665544...456666666666644567999************************99******* PP GAGA_bind 209 PvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy.dlsnpvDLkdhWAkHG 293 P+PvCsCtG+ rqCYkWGnGGWqS+CCttt+S++PLP+ +++++aR++grKmS++af+klL++Laa+G+ dls pvDLkdhWAkHG Rsa1.0_02654.1_g00004.1 172 PPPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMHPLPALPNKKHARVGGRKMSGSAFNKLLSRLAAQGHpDLSDPVDLKDHWAKHG 257 ****************************************************************889*********** PP GAGA_bind 294 tnkfvti 300 tn+++t Rsa1.0_02654.1_g00004.1 258 TNRYITS 264 ***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	4.9E-117	1	265	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.9E-86	1	264	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MDDGRHKAPH GQWMMQQQHQ HQPSIKQVMS IIAERDAAIQ ERNLAISERK SAVAERDMAF 60 LQRDTAIAER NNAIMERDSA LSALQFPLES AKPKRGKRVR DPKTTPASKR GTKNQRKVKK 120 EKEDDDLSKI MFVKTTTLGY VEEEEAAGSK SDWRSQEMAG LNQVVYDETT MPPPVCSCTG 180 VFRQCYKWGN GGWQSSCCTT TLSMHPLPAL PNKKHARVGG RKMSGSAFNK LLSRLAAQGH 240 PDLSDPVDLK DHWAKHGTNR YITSK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02654.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009138858.1	1e-148	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
Refseq	XP_009138859.1	1e-148	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
Swissprot	Q8L999	1e-102	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	M4DDD6	1e-147	M4DDD6_BRARP; Uncharacterized protein
STRING	Bra014504.1-P	1e-148	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6169	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.3	1e-105	basic pentacysteine 6