PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02675.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 225aa    MW: 26670.5 Da    PI: 4.7303
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02675.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-192785356
                             --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                 Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                             +R+++t+eq+ +Lee++ +  r+p+ +++ e+A+kl    +++ ++V++WFqN++ +e+
  Rsa1.0_02675.1_g00003.1 27 SRWNPTPEQTMVLEEVYSSgIRTPTIQQIHEIASKLqnygRIEGKNVFYWFQNHKSRER 85
                             7*****************99*************************************98 PP
2Wus_type_Homeobox106.81.4e-342687364
        Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                             ++RW+PtpeQ ++Lee+y+sG+rtP+ ++i++i+++L++yG+ie+kNVfyWFQN+k+Rer k
  Rsa1.0_02675.1_g00003.1 26 HSRWNPTPEQTMVLEEVYSSGIRTPTIQQIHEIASKLQNYGRIEGKNVFYWFQNHKSRERLK 87
                             68**********************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.5112287IPR001356Homeobox domain
SuperFamilySSF466891.2E-122386IPR009057Homeodomain-like
SMARTSM003897.9E-42491IPR001356Homeobox domain
PfamPF000466.0E-172785IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-82785IPR009057Homeodomain-like
CDDcd000861.28E-42885No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MNDIRNDEQI LTASTEEPRE EEKYMHSRWN PTPEQTMVLE EVYSSGIRTP TIQQIHEIAS  60
KLQNYGRIEG KNVFYWFQNH KSRERLKRRR GDQQVVTIIN NVHEEPLHKD NAMNNIIGDG  120
KREEYETGLM KDKEATCQNQ INPINTSEIN YHLIVASKPS QEADHEQYTL NDDDDEEEET  180
RKSRTLDLFP VIENQEPTGF AEKNTKPNKL YCNYCYYYEF MPQMN
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02675.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436043.11e-155PREDICTED: WUSCHEL-related homeobox 6-like
TrEMBLA0A0D3DX851e-117A0A0D3DX85_BRAOL; Uncharacterized protein
STRINGBo8g106350.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.15e-27WUSCHEL related homeobox 1