PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02693.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 175aa    MW: 19876.8 Da    PI: 9.3369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02693.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-0590112123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++Cg++F +   L  H+r+H
  Rsa1.0_02693.1_g00004.1  90 HKCSICGQMFGTGQALGGHMRKH 112
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.8E-114469IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-744112No hitNo description
SMARTSM003550.434567IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9724572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.5E-1089114IPR007087Zinc finger, C2H2
SMARTSM003550.008190112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.82790117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKRDRSDDED FITHIDMVKT LTMLSHSFVV KQIDPTGSKS NDNRFECKTC NRKFDSFQAL  60
GGHRASHKKP KLLNVEQEQD KIRNNENAVH KCSICGQMFG TGQALGGHMR KHRASMINEQ  120
SVISSMIYST SPVMNRCNSS KMAMRLDLNL TPLENDLVYI FAKNLVPQID LKSVN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02693.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477214.11e-129PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD43e-65ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3N6T0P61e-107A0A3N6T0P6_BRACR; Uncharacterized protein
STRINGBra039806.1-P1e-102(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-89C2H2 family protein