PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02701.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 105aa MW: 11775.5 Da PI: 5.633

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02701.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	25.6	1.4e-08	41	96	189	250
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++++++++pgEa++V+++ h+l+d + s + ++++++ +P +v+v+eqe+++n+ Rsa1.0_02701.1_g00001.1 41 TDPSRFETRPGEAVVVHWMQ--HQLYDVTRSYLD----AVEIIRRRKPSLVTVMEQELSCND 96 589999***********9..999988888888....9******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.7E-6	41	96	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MGVRCEALID VGWEPETRRF RNLLIPPLRV SSHVGVIGDV TDPSRFETRP GEAVVVHWMQ 60 HQLYDVTRSY LDAVEIIRRR KPSLVTVMEQ ELSCNDDGGG GCGVV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02701.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009140132.1	3e-27	PREDICTED: scarecrow-like protein 23
Swissprot	Q9FHZ1	7e-23	SCL23_ARATH; Scarecrow-like protein 23
TrEMBL	A0A397ZNW7	6e-26	A0A397ZNW7_BRACM; Uncharacterized protein
TrEMBL	M4E9K0	7e-27	M4E9K0_BRARP; Uncharacterized protein
STRING	Bra025456.1-P	1e-27	(Brassica rapa)
STRING	XP_006405294.1	2e-26	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25207	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41920.1	4e-24	GRAS family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yoon EK, et al. Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots. Mol Plant, 2016. 9(8): p. 1197-1209 [PMID:27353361]