PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02710.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 338aa MW: 36997.2 Da PI: 5.7894

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02710.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.3e-10	171	218	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq Rsa1.0_02710.1_g00004.1 171 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 218 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.72E-17	165	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.88E-11	165	222	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.1E-17	167	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.542	167	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	171	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-10	173	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MENESIKYLP LGQSDPFGNE GTIGDLLGRF CNNNPPQEIS LISPAGIRFP PYPGGHFGSD 60 QLTGQDSNKS SLLDPPDSDH RVQTPKPNSR KRKSIPVSVS GGNGKDSPAS SSLTASNSKV 120 SGGEIVGSKR SKQDEAGSSK NVIDNKDDAK PPEPPKDYIH VRARRGQATD SHSLAERARR 180 EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT INPRMEFNPN 240 AALSTEMIQP GESLTQSLYA MACSEQRLPS GYYSLAKNMP RFSDTQFPSS DGFVQAEPQG 300 FWENDLQSVV QMGFGDVQQQ SSNNNSCSEP TLQMKLEQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	93	SRKRKS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00376	DAP	Transfer from AT3G23690	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02710.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065441	1e-179	AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBank	AY096536	1e-179	AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018432853.1	0.0	PREDICTED: transcription factor bHLH77-like
Swissprot	Q9LK48	0.0	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A0D3D5D3	0.0	A0A0D3D5D3_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6E9G2	0.0	A0A3P6E9G2_BRAOL; Uncharacterized protein
STRING	Bo7g039150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-157	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]