PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02754.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 365aa    MW: 38124.2 Da    PI: 8.9928
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02754.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.21.7e-3955170293
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec......eaesssss 81 
                              a+ k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++              
  Rsa1.0_02754.1_g00002.1  55 AAVKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStlnatlR-----GG 135
                              66799***********************************************************999997775333331.....22 PP

                      TCP  82 as....nsssg...................kaaks 93 
                              +s    +ss++                   +++++
  Rsa1.0_02754.1_g00002.1 136 GStlfaQSSKSspfgstgmslyedsngangSSSSA 170
                              22222111111345555555544444444322222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-3461155IPR005333Transcription factor, TCP
PROSITE profilePS5136927.89261115IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDQNSHDRPT AETAAAGLQL NSTENPSPGR SVPFATSTST STTSSGTALA VVKPAAVKKP  60
SKDRHTKVDG RGRRIRMPAL CAARVFQLTR ELGHKSDGET IEWLLQQAEP AIIASTGTGT  120
IPANFSTLNA TLRGGGSTLF AQSSKSSPFG STGMSLYEDS NGANGSSSSA AKLLNVATAA  180
QNAAVFGFHH QGYPPTALGK PYREDYFKES EPSGSSQKPG QFQEQEMGAG PGMGRGAANV  240
VPQPMWAVAP GSTNGGSAFW MLPMSASSGG REPMQQQPGH QMWAFNPGSY PVGTGRVVTA  300
PMGSMMLGGQ QLGLGVAESN MAATMRGSRD GLAMTLDQHQ HQHHQQHQEP NQSQASENGG  360
GDDKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02754.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470407.10.0PREDICTED: transcription factor TCP22-like
RefseqXP_018470410.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G41e-165TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A398AAY80.0A0A398AAY8_BRACM; Uncharacterized protein
STRINGBra008001.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-134TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]