PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02754.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 372aa    MW: 42662 Da    PI: 7.9569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02754.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000692143123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C++Cg s s k++  +Hi++H
  Rsa1.0_02754.1_g00005.1 21 YLCQYCGISRSKKYLIASHINSH 43
                             56********************6 PP
2zf-C2H217.21.4e-057192223
                             EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                             +C+ C+  F+ + +Lk+H+++H
  Rsa1.0_02754.1_g00005.1 71 TCHECSAEFKKPAHLKQHMQSH 92
                             6*******************99 PP
3zf-C2H217.11.5e-0598122123
                              EEET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                              ++C   dC+ s++rk++L+rH+ tH
  Rsa1.0_02754.1_g00005.1  98 FECYvdDCTSSYRRKDHLNRHLLTH 122
                              789999*****************99 PP
4zf-C2H220.99.7e-07183205323
                              ET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                              C+   Cgk F+ +s+L++H+ +H
  Rsa1.0_02754.1_g00005.1 183 CKenGCGKAFKYPSQLQKHQDSH 205
                              77789***************998 PP
5zf-C2H220.89.9e-07271296123
                              EEET..TTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                              +kC+   C+ +Fs  snL++H++  H
  Rsa1.0_02754.1_g00005.1 271 FKCEveGCSSTFSKASNLQKHMKAvH 296
                              89********************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355282143IPR015880Zinc finger, C2H2-like
SMARTSM003550.0557092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.577097IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-67196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SuperFamilySSF576679.17E-1179130No hitNo description
Gene3DG3DSA:3.30.160.601.3E-897124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.298122IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.88998127IPR007087Zinc finger, C2H2
PROSITE patternPS000280100122IPR007087Zinc finger, C2H2
SuperFamilySSF576677.32E-5125153No hitNo description
SMARTSM003551.2127152IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743127157IPR007087Zinc finger, C2H2
PROSITE patternPS000280129152IPR007087Zinc finger, C2H2
SuperFamilySSF576679.43E-6176207No hitNo description
Gene3DG3DSA:3.30.160.603.1E-6176205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004181205IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492181210IPR007087Zinc finger, C2H2
PROSITE patternPS000280183205IPR007087Zinc finger, C2H2
SMARTSM003550.24213238IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280215238IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-4215236IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035522241262IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.45E-9252307No hitNo description
Gene3DG3DSA:3.30.160.602.5E-8252293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.0E-4271296IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.152271301IPR007087Zinc finger, C2H2
PROSITE patternPS000280273296IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-4295325IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.5302328IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280304328IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGEEAANVDT KASKAKDIRH YLCQYCGISR SKKYLIASHI NSHHKMEVEM ERDEEEAFEV  60
DEEEEVFGKN TCHECSAEFK KPAHLKQHMQ SHSLERPFEC YVDDCTSSYR RKDHLNRHLL  120
THKGKLFKCP VESCKSEFSV HGNISRHVKK FHSKDDGDKD KEDTGHGDSQ PSECSTGQKK  180
LFCKENGCGK AFKYPSQLQK HQDSHVKLDS IEAFCSEPGC MKYFTNEECL KAHIRSSHQH  240
INCEICGSKH LKKNIKRHLR THEEGSSPGE FKCEVEGCSS TFSKASNLQK HMKAVHEDIR  300
PFVCGFTGCG MRFAYKHVRN NHEKSGSHIY TCGDFVEADE DFTSRPRGGV KRKHVTAEML  360
IRKRVMPPQF DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wjq_D1e-17213319284Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02754.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691614.10.0transcription factor IIIA-like
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A398AH350.0A0A398AH35_BRACM; Uncharacterized protein
TrEMBLM4CUV90.0M4CUV9_BRARP; Uncharacterized protein
STRINGBra008004.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA