PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02786.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 520aa    MW: 58460.8 Da    PI: 8.5507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02786.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13345390555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L+ A e++ sLq
  Rsa1.0_02786.1_g00002.1 345 HMISERKRREKLNDSFQALRSLLPPG-----TKKDKASVLTTAREHLTSLQ 390
                              8899********************97.....8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-15333404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.059340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-11342390No hitNo description
Gene3DG3DSA:4.10.280.105.9E-15344408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10345390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-13346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDAIFLTDDP NTRKQLIGSL AHSLGCIYIS LWSYYFPRPS NYLISFDGYL NESSHEPSTS  60
TGSLARRLFH EYRQSIIPLQ NGHIPSMAFM NNLPYLEIRT QDIQRLASND AQRLFYQESR  120
IQTVIFMGCR SGEIELGFTY DAANMKIEAS LRDWFPEDFS RKTSPVNSDY LWPPPPPSSS  180
SSSLRSLDSP QNASEYSSLL FPLTPKPSTT TDAVNVPLLA PGTTVATTNM IHQQQQEPLF  240
RNREREDEVM ARAILAVITA SSSPSSTSSS PQRKGRATAF KRYYCMTSGG GGSGVRRQSM  300
MRRAISYYNR LNIDRRERFV RENATDGGGD GSGGGRVPTA TQLHHMISER KRREKLNDSF  360
QALRSLLPPG TKKDKASVLT TAREHLTSLQ GDISKLLERN RELEAKLAGE REMENVLQPD  420
ERFNVSIIHI PESTSRERGL DLRVDLRGDN IRADDLIIRL LEFLRQINNV SLISINGKAR  480
TSEDGVTTVV LVSFRLKIEG ECDESAFQEA VRRVVADLAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348353ERKRRE
2349354RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02786.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469030.10.0PREDICTED: putative transcription factor bHLH041
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A078G7U10.0A0A078G7U1_BRANA; BnaA02g08430D protein
STRINGXP_010483181.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]