PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02817.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 192aa    MW: 21210.1 Da    PI: 9.4408
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02817.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18149185135
                     GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C+  nC++ +Tp+WRrgp g+ktLCnaCG+++rk+++
  Rsa1.0_02817.1_g00001.1 149 CTnmNCNAVDTPMWRRGPLGPKTLCNACGIKFRKEEE 185
                              55559*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.0E-6145192IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-10147186No hitNo description
PfamPF003206.4E-16149185IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-13152184IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.20E-10153182No hitNo description
PROSITE profilePS5011411.424153181IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MENELDLTLR LGLPTPAVET QLSLNTPPTT NQGTNVDGGR NDGGETHGRR HILRNEDDVN  60
MRYYNLIFNH FAGIGETLNF SPFPIQPSAP VPVPATPTRS DYVLIDVPAR RAVRNSLATG  120
NALDANANKK QRRGCGGCCG GRIGWLRKCT NMNCNAVDTP MWRRGPLGPK TLCNACGIKF  180
RKEEERMSKR TF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02817.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490247.11e-111PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT451e-46GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A078H4R77e-97A0A078H4R7_BRANA; BnaC03g41730D protein
STRINGBra001801.1-P6e-92(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.13e-49GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]