PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02823.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 204aa    MW: 23387.1 Da    PI: 8.7566
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02823.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH474.7e-151567155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                             +r++h+e+Er+RR+++ s f  Lr +lP+      ++K s ++ + +Av+YIk+L+
  Rsa1.0_02823.1_g00003.1 15 KRAKHKEIERQRRQELTSLFKHLRYILPSqY---VKGKRSSSDHVHEAVNYIKDLE 67
                             79***************************66...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-151287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-91271No hitNo description
PROSITE profilePS5088813.6681466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-121567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-121583IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0082072IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTDEITKEVV EPKNKRAKHK EIERQRRQEL TSLFKHLRYI LPSQYVKGKR SSSDHVHEAV  60
NYIKDLEKKI EEFSEKRDRI KKSITHPSPA GYCPIRSLAA SCSSSSLSSY CSCVGDTHID  120
VKVRSCLIGI EIVASCCFRH ESRLSTVLQL LVQEQCFNVV SCISTRLHLR FLHTIVCEVE  180
KGIQINFSEL QEKIIKMGTS CLIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11426KRAKHKEIERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02823.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481731.11e-145PREDICTED: transcription factor bHLH55 isoform X1
SwissprotQ9LN951e-95BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A3P5YDB81e-110A0A3P5YDB8_BRACM; Uncharacterized protein
STRINGBo5g016800.11e-107(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.12e-90bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Wisman E, et al.
    Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes.
    Proc. Natl. Acad. Sci. U.S.A., 1998. 95(21): p. 12432-7
    [PMID:9770503]