PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02829.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 257aa    MW: 28751.2 Da    PI: 8.4823
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02829.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.8e-185599147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                             +g++T++E+e ++  +  lG++ W+tIa+ m+ gR+++++k++w++ 
  Rsa1.0_02829.1_g00003.1 55 KGKFTPQEEETIISFHSILGNR-WATIAQQMP-GRSDNDIKNHWNSC 99
                             79********************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.171149IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-113560IPR009057Homeodomain-like
SuperFamilySSF466892.8E-2235108IPR009057Homeodomain-like
PROSITE profilePS5129425.57450104IPR017930Myb domain
SMARTSM007174.3E-1554102IPR001005SANT/Myb domain
PfamPF002495.9E-165599IPR001005SANT/Myb domain
CDDcd001673.60E-115797No hitNo description
Gene3DG3DSA:1.10.10.605.0E-2161104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRREENGRR RKTGNSSLTS TYTASATGVF SLPKLRCGKS CRLRWLNYLR PGVKKGKFTP  60
QEEETIISFH SILGNRWATI AQQMPGRSDN DIKNHWNSCL KKRLERNGID PMTHQPMINL  120
AVKTQSFNTD CGSSSCSTAS PFSSSFSSGS ARLLNKIATG ISSRQHGVDR IKNILSDPSI  180
TSINGQEEGF EQLKIDHGKM LASDDQTDDF LMWDEEKTRH FMEEIGVMDF QTNGVYNPSS  240
SAQYGVYESG LLDDHLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-221710520109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02829.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464684.11e-167PREDICTED: transcription factor MYB34-like, partial
TrEMBLA0A3P6FEG91e-137A0A3P6FEG9_BRAOL; Uncharacterized protein
STRINGBo8g068030.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18710.12e-61myb domain protein 47