PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02830.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 489aa    MW: 53927.3 Da    PI: 5.6557
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02830.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.11e-941244882374
                     GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              +e L++++++v+s++l+ a+ +L+rl+++ +sp+g+p+ R+a+yf+eAL + l++      +  + + ts+++ +e++ a k fs 
  Rsa1.0_02830.1_g00004.1 124 IEDLIRVVDCVDSDELQHAHVILSRLNQRlRSPTGRPLLRAAFYFKEALGSLLSG-----TNRNKNRLTSWTEIVERIRAIKEFSA 204
                              689*************************99*************************.....6677888888889************* PP

                     GRAS  87 vsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA 169
                              +sPi+ fsh+taNqaIl++++++     Hi+Df+i+ G+Q+++L++++a+++      lR+T+v+++e   + e++ ++e+La+fA
  Rsa1.0_02830.1_g00004.1 205 ISPIPLFSHFTANQAILDSLHQSssPFAHIVDFEIGFGGQYASLMREIAEKSaVTGGFLRVTAVVPEE--FAVETRLVKENLAQFA 288
                              **********************966678***********************955556*********66..889999********** PP

                     GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adh.nse 251
                              + l+++f++++++++++e+l+++++r+ +gE ++V ++  +++ l       +  +++++ ++++sP+vvv++++e       +++
  Rsa1.0_02830.1_g00004.1 289 ADLKIRFQIDFVLMRTFEMLSFKAIRFVEGERTVVLISPVIFHRL-------NGVSSFVNDLRRVSPNVVVFADSEgwdG-IsGAG 366
                              ***************************************999999.......33457*******************6433.24899 PP

                     GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh.etlekWrerleeaGFkpvplsekaakq 336
                              sF ++f++ le+y+++++sl+a +p+ +  ++ +E++ll+++i  +v ++  +  +rh    ++Wre++ +aG++ vpls+++  q
  Rsa1.0_02830.1_g00004.1 367 SFQREFVSGLEFYTVVLESLDAAAPTGDLGKKIIEAFLLRPKIAAAVEAAAVS--KRHgGGEMTWREAFCAAGMRMVPLSQFVDFQ 450
                              ***********************************************999998..555156789********************** PP

                     GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              a++l++k +++g++v +++g+lvl+W++rpLv++SaWr
  Rsa1.0_02830.1_g00004.1 451 AQCLVEKAQVRGFHVAKRQGELVLCWHGRPLVATSAWR 488
                              *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.35397468IPR005202Transcription factor GRAS
PfamPF035143.6E-92124488IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MRVPASSDSN SGGKNLVAYD EPTSVLGLRR SPSPTAVEEK PLVSAASGVD NQFPSDDHAM  60
RSMDWDSIMR ELELDDDSTP NLKPNFPPSA HFAVVDPPLP GFPDQLNPAE YGNDNNEGGG  120
FDIIEDLIRV VDCVDSDELQ HAHVILSRLN QRLRSPTGRP LLRAAFYFKE ALGSLLSGTN  180
RNKNRLTSWT EIVERIRAIK EFSAISPIPL FSHFTANQAI LDSLHQSSSP FAHIVDFEIG  240
FGGQYASLMR EIAEKSAVTG GFLRVTAVVP EEFAVETRLV KENLAQFAAD LKIRFQIDFV  300
LMRTFEMLSF KAIRFVEGER TVVLISPVIF HRLNGVSSFV NDLRRVSPNV VVFADSEGWD  360
GISGAGSFQR EFVSGLEFYT VVLESLDAAA PTGDLGKKII EAFLLRPKIA AAVEAAAVSK  420
RHGGGEMTWR EAFCAAGMRM VPLSQFVDFQ AQCLVEKAQV RGFHVAKRQG ELVLCWHGRP  480
LVATSAWRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-2112948725378Protein SCARECROW
5b3h_A1e-2112948724377Protein SCARECROW
5b3h_D1e-2112948724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02830.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435220.10.0PREDICTED: scarecrow-like protein 15
RefseqXP_018435232.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLM4EH350.0M4EH35_BRARP; Uncharacterized protein
STRINGBra028100.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]