PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02839.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 307aa    MW: 34128.1 Da    PI: 4.7792
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02839.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.4e-15111158253
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                              +  GVr++k +g+W+AeIr+p     +  r +lg+f+t+e A++a+   rk++
  Rsa1.0_02839.1_g00001.1 111 KPVGVRQRK-WGKWAAEIRHPI----TkIRTWLGTFDTEEAAHQAYKVKRKEY 158
                              789*****9.**********72....36**********999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.48E-18110151No hitNo description
PfamPF008475.3E-9111159IPR001471AP2/ERF domain
PROSITE profilePS5103217.187111169IPR001471AP2/ERF domain
SMARTSM003803.7E-13111171IPR001471AP2/ERF domain
PRINTSPR003671.2E-5112123IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-14113158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-17114153IPR001471AP2/ERF domain
PRINTSPR003671.2E-5134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MVGLITKQLS LSDMKKPKRC NPQETQQPLR KVRILVNDPY ATDDDSSSEE GDETKMRRIV  60
RVVNFPPLES VAPPPPPRVA ESASVSSSQD STKTISKKAA AASRPRCSKK KPVGVRQRKW  120
GKWAAEIRHP ITKIRTWLGT FDTEEAAHQA YKVKRKEYDA LLSTTTNDSV SETSQCSRSS  180
PPEQDTSAST PTTNKLKEEI KIAPATGVDS SKEVLFGFNF AELPIPDLGF FAEDEGQMAA  240
DLGFFAEENL DCLFTDDQFD DFTMLGFEDS GGGPSELPDW DFPDVEFDSS FFFADYHQHI  300
PLKSFAA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02839.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452100.10.0PREDICTED: ethylene-responsive transcription factor ERF118
SwissprotQ9CA271e-78EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A0D3CYZ81e-153A0A0D3CYZ8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FZF41e-153A0A3P6FZF4_BRAOL; Uncharacterized protein
STRINGBo6g106990.11e-154(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-67ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]