PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02839.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 595aa    MW: 66074.3 Da    PI: 7.1052
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02839.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.32.4e-2810108194
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C++dC+++p++     +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++
  Rsa1.0_02839.1_g00002.1  10 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMW 95 
                              6*********************9999767889****************************************************** PP

                   DUF260  82 klqqqleqlkael 94 
                              ++++  +q+++++
  Rsa1.0_02839.1_g00002.1  96 SGNWAQCQAAVDA 108
                              ********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.7569115IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-2210107IPR004883Lateral organ boundaries, LOB
SuperFamilySSF517352.0E-60275590IPR016040NAD(P)-binding domain
CDDcd089581.98E-150278572No hitNo description
Gene3DG3DSA:3.40.50.7208.1E-60278586IPR016040NAD(P)-binding domain
PfamPF013707.8E-25279517IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080110Biological Processsporopollenin biosynthetic process
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MSLIKIMRIS CNGCRVLRKG CNQDCTIRPC LQWIKSADSQ ANATLFLAKF YGRAGLLNLI  60
ESGPDHLRPA IFRSLLYEAC GRIVNPVDGS VGLMWSGNWA QCQAAVDAIL NGLPITHTPL  120
PSASASHHII PPHRTYDIRH VAKDPTTGGD SSESLALAPR VNGNKVKTQT GRLKRLAETV  180
DYQLGECSHD TWQLQSSGAT HGYGQLALEN VANRRGDPLN QSSNLGCDDQ VDTNEVGLEL  240
RLDLIVAAFQ DHNIFTILKN KLKMFNDYKE TEKEMSEYLV TGGTGFIASY IIKSLLELGH  300
TVRTTVRNPQ DEEKVGFLWE LRGAKERLKM FKADLTVDGS FDEAVNGVDG VFHTASPVIV  360
PQDHNIQETL VDPIIKGTTN VMNSCAKSKT TLKRIVLTSS CSSIRYRFDA TKASPLNESH  420
WSDIEYCKRF NLWYAYAKTL GEKEAWRIAE EKGLNLVVVN PSFVVGPLLG PKPTSTLLYI  480
LSVVKGLAGE YRNFTVGFVH IDDVVDAHVL AMEEPKASGR IICSSSVAHW SEIIELLRNK  540
YPNYPLENKC SDKEGDNNPH SMDTRKIHEL GFASFKSLPE MFDDCIRSFQ EKGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r1s_A7e-7828059515322cinnamoyl CoA reductase
4r1s_B7e-7828059515322cinnamoyl CoA reductase
4r1t_A7e-7828059515322cinnamoyl CoA reductase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine). Acts on tetraketide alpha-pyrones and reduces the carbonyl function on the tetraketide alkyl chain to a secondary alcohol function. {ECO:0000269|PubMed:21193572}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02839.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018455883.10.0PREDICTED: tetraketide alpha-pyrone reductase 2
SwissprotQ9CA280.0TKPR2_ARATH; Tetraketide alpha-pyrone reductase 2
TrEMBLA0A078HJG00.0A0A078HJG0_BRANA; BnaC06g30130D protein
TrEMBLA0A0D3CYZ70.0A0A0D3CYZ7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6H6T10.0A0A3P6H6T1_BRAOL; Uncharacterized protein
STRINGBo6g106980.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-148LOB domain-containing protein 42
Publications ? help Back to Top
  1. Costa MA, et al.
    An in silico assessment of gene function and organization of the phenylpropanoid pathway metabolic networks in Arabidopsis thaliana and limitations thereof.
    Phytochemistry, 2003. 64(6): p. 1097-112
    [PMID:14568076]
  2. Morant M, et al.
    CYP703 is an ancient cytochrome P450 in land plants catalyzing in-chain hydroxylation of lauric acid to provide building blocks for sporopollenin synthesis in pollen.
    Plant Cell, 2007. 19(5): p. 1473-87
    [PMID:17496121]
  3. Grienenberger E, et al.
    Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis.
    Plant Cell, 2010. 22(12): p. 4067-83
    [PMID:21193572]
  4. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  5. Lallemand B,Erhardt M,Heitz T,Legrand M
    Sporopollenin biosynthetic enzymes interact and constitute a metabolon localized to the endoplasmic reticulum of tapetum cells.
    Plant Physiol., 2013. 162(2): p. 616-25
    [PMID:23632852]