PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02873.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NF-YB
Protein Properties Length: 198aa    MW: 21450.9 Da    PI: 7.507
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02873.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB178.46.6e-5632125194
                    NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                              vreqdrflPian+srimk+ lPan+ki+kdake+vqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvy
  Rsa1.0_02873.1_g00002.1  32 VREQDRFLPIANISRIMKRGLPANGKIAKDAKEIVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVY 117
                              69************************************************************************************ PP

                    NF-YB  87 lkkyrele 94 
                              l++yre+ 
  Rsa1.0_02873.1_g00002.1 118 LTRYREFT 125
                              *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.6E-5128125IPR009072Histone-fold
SuperFamilySSF471131.55E-3835125IPR009072Histone-fold
PfamPF008082.7E-2738102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.6E-206684No hitNo description
PROSITE patternPS0068506985IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.6E-2085103No hitNo description
PRINTSPR006151.6E-20104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MAESQQQAKS PGGGGGGESG GDQSPRSSSS HVREQDRFLP IANISRIMKR GLPANGKIAK  60
DAKEIVQECV SEFISFITSE ASDKCQREKR KTINGDDLLW AMATLGFEDY IDPLKVYLTR  120
YREFTNLLSL PFVLLLGKSQ MEGDTKGSAK GGDANAKRDG QSSQNGQFSQ LAHQGSFSQA  180
PYGNSQGQHM MVPMPGTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4732123192Transcription factor HapC (Eurofung)
4g92_B5e-4732123192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02873.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530833e-85AK353083.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133115.11e-115PREDICTED: nuclear transcription factor Y subunit B-8
RefseqXP_013738285.11e-115nuclear transcription factor Y subunit B-8
SwissprotQ8VYK41e-107NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A078I9E01e-118A0A078I9E0_BRANA; BnaA03g16960D protein
STRINGBra023095.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-97nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]