PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_02876.1_g00005.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

VOZ

Protein Properties

Length: 204aa MW: 23369.7 Da PI: 10.2203

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_02876.1_g00005.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	291.5	8.2e-90	22	173	64	215
VOZ 64 aalsakvqgkevgipecegaatakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefg 149 +a++ak+ gk vgip+cega+++k+pwnaaelf+l+l+egetirewlffdkprra++sgnrkqrslpdysgrgwhesrkq+mke++ Rsa1.0_02876.1_g00005.1 22 HAVRAKTLGKVVGIPVCEGAVNTKCPWNAAELFHLELVEGETIREWLFFDKPRRAYDSGNRKQRSLPDYSGRGWHESRKQLMKEQA 107 599********************************************************************************* PP VOZ 150 glkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrl 215 g+krsyymdpqp++ fewhl+ey+ine+d +alyrlelkl+++kks+kg+v+kd+l+dlqkk+ ++ Rsa1.0_02876.1_g00005.1 108 GQKRSYYMDPQPPGLFEWHLFEYQINESDVCALYRLELKLTNGKKSPKGRVAKDPLVDLQKKMEKM 173 ************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MQLQERFSHL QAARKEGRLG DHAVRAKTLG KVVGIPVCEG AVNTKCPWNA AELFHLELVE 60 GETIREWLFF DKPRRAYDSG NRKQRSLPDY SGRGWHESRK QLMKEQAGQK RSYYMDPQPP 120 GLFEWHLFEY QINESDVCAL YRLELKLTNG KKSPKGRVAK DPLVDLQKKM EKMGQLTPEG 180 ASDKPSPPTK GRTKATKERT KSTN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ1 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Binds as a dimer to the palindromic sequence 5'-GCGTNNNNNNNACGC-3'. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_02876.1_g00005.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. Down-regulated by far-red light (at protein level). {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018479977.1	1e-152	PREDICTED: transcription factor VOZ2-like
Swissprot	Q9SLB9	1e-105	VOZ2_ARATH; Transcription factor VOZ2
TrEMBL	A0A0D3C5T6	1e-120	A0A0D3C5T6_BRAOL; Uncharacterized protein
STRING	Bo4g191510.1	1e-120	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11060	25	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42400.1	1e-107	vascular plant one zinc finger protein 2

Publications ? help Back to Top
Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Koguchi M,Yamasaki K,Hirano T,Sato MH Vascular plant one-zinc-finger protein 2 is localized both to the nucleus and stress granules under heat stress in Arabidopsis. Plant Signal Behav, 2017. 12(3): p. e1295907 [PMID:28277968] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119]