PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02923.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 872aa    MW: 93892.2 Da    PI: 8.0203
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02923.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-19267318556
                              SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              +++t++q+++Le++F+++++p++++r +L+k+lgL  rq+k+WFqNrR+++k
  Rsa1.0_02923.1_g00002.1 267 HRHTPHQIQRLESAFNECQHPDEKQRMQLSKELGLAPRQIKFWFQNRRTQKK 318
                              689**********************************************988 PP
2START981.7e-314576372166
                              HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-T CS
                    START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddke...qWde 74 
                              la +a++el+++a+ +ep+W k     + +n + +   f++s +        + ea+r sg+v+ ++++lv  l+d+ +    +  
  Rsa1.0_02923.1_g00002.1 457 LAVTAMEELLRLAQTNEPLWIKTDgcrDVLNLESYDNMFPRSSSrggknhnLQKEASRSSGIVFTNAMTLVDMLMDSVKsaeIFPS 542
                              6889*******************999977777777777777766778889999*************************77777888 PP

                              T-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEE CS
                    START  75 tlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgil 153
                               +a+ +tl+v+ssg       al+lm  elq+lsplvp R+f ++Ry++q + g+w++v vS + +q+ +    + R+ ++pSg+l
  Rsa1.0_02923.1_g00002.1 543 VVAASKTLAVVSSGlrgnhgDALHLMLEELQVLSPLVPtREFSVLRYCQQIEHGTWAVVNVSYELPQFIS----SSRSYRYPSGCL 624
                              888*****************************************************************87....467777****** PP

                              EEEECTCEEEEEE CS
                    START 154 iepksnghskvtw 166
                              i++++ng+sk  +
  Rsa1.0_02923.1_g00002.1 625 IQDMANGYSKRSV 637
                              *********9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-19252320IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-20252322IPR009057Homeodomain-like
PROSITE profilePS5007117.329260320IPR001356Homeobox domain
SMARTSM003896.2E-19261324IPR001356Homeobox domain
CDDcd000862.41E-19262321No hitNo description
PfamPF000463.7E-17267318IPR001356Homeobox domain
PROSITE patternPS000270295318IPR017970Homeobox, conserved site
PROSITE profilePS5084831.415447634IPR002913START domain
SuperFamilySSF559613.85E-21449634No hitNo description
CDDcd088759.78E-68451634No hitNo description
SMARTSM002348.6E-14456683IPR002913START domain
PfamPF018521.1E-24457637IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-4512632IPR023393START-like domain
SuperFamilySSF559619.2E-19634835No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MLHAFWNSSN IVPYPGGAAP AAAAAAGGAA PAAGGAAPAA GGAVAGAAPA GGGAAPAAGG  60
AVAASAGGGG AAPAAGGAAP PAGIPLYQGC FLNHFKMSPN DPENVFPPQN PQYPPQNFSS  120
FNGLWADRAN GVLSAYYLMS PMMRPMAVSP SVAPAVNPVA RRVVAIVAGT RIGLKMMKSG  180
ADTTNATVQT ASVRPAKAKK TMEQAAILQL DEVALTLLLE DVNPEKREAI EEAVMCNVKC  240
IESRRLMEFL GDSSETDKKT MKKKRFHRHT PHQIQRLESA FNECQHPDEK QRMQLSKELG  300
LAPRQIKFWF QNRRTQKKAQ HERADNCALK EENDRIRCEN IAIREALKHT ICPTCGDTPA  360
HEDSYFDEHK LRIENVQLRE ELERVSSIAA KFMGRPLPHL PPLLLNQTPR ELFHGGGPSL  420
DFDLLPASCS SMPATTLLPS QPNLVLSNMD KSLMTNLAVT AMEELLRLAQ TNEPLWIKTD  480
GCRDVLNLES YDNMFPRSSS RGGKNHNLQK EASRSSGIVF TNAMTLVDML MDSVKSAEIF  540
PSVVAASKTL AVVSSGLRGN HGDALHLMLE ELQVLSPLVP TREFSVLRYC QQIEHGTWAV  600
VNVSYELPQF ISSSRSYRYP SGCLIQDMAN GYSKRSVMKL AQRMVSNFCL SVGTSNNTRS  660
TVVSGMNEFG IRVTSYKSQH EPNGTVLCAA TSFWLPVSPL IVFNFLKDER TRPQWDVLLN  720
GSSVQEVAHI ANGSHPGNCI SVLRGFNASS SQNNMLILQE SCVDSSGSLV VYTPVDLPAL  780
NMAMSGQDTS YIPILPSGFA ILPDGSRNNR TPELKVEGGG GGGGSLITVG FQIMVSSLQS  840
RKLNMESMET VNNLISSTVH HIKTTLNCPS TA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as negative regulator of trichome branching in association with HDG11 (PubMed:16778018). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). Acts as positive regulator of SCL18/LAS expression (PubMed:25358340). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:25358340, ECO:0000269|PubMed:25564655}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02923.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973835.10.0PREDICTED: homeobox-leucine zipper protein HDG11
SwissprotQ9LMT80.0HDG12_ARATH; Homeobox-leucine zipper protein HDG12
TrEMBLA0A1U8JEJ50.0A0A1U8JEJ5_GOSHI; homeobox-leucine zipper protein HDG11-like
STRINGGorai.008G293300.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]