PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02931.1_g00006.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 251aa    MW: 26376.9 Da    PI: 4.312
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02931.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029146167223
                              EETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              kC+ Cg+sF ++     H+r H
  Rsa1.0_02931.1_g00006.1 146 KCNVCGRSFLSWKAVFGHLRAH 167
                              7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-5142171No hitNo description
PROSITE profilePS501579.307145172IPR007087Zinc finger, C2H2
PROSITE patternPS000280147167IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSDPEKTKVN TEEKINENSD ESDYLWSDEE EEGEIREIVL ALPAMSLGDV DEATRQKAVA  60
AADLLIAAAQ EAAAKGNMEQ GVGGSGETAK KKRGRRPGTV MSDDLADVAG ASGSKATVVA  120
GDEEPAKKPR KKGSPKLINP PEGPPKCNVC GRSFLSWKAV FGHLRAHTDR GYFGFFPPPT  180
FNAAVEASGA AVAASCGGRG LGLGTGGLNF DLNADPVDDE EEETGTGSAP KFDLNRSPPQ  240
DEDENKEDNA E
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02931.1_g00006.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469467.10.0PREDICTED: uncharacterized protein LOC108841187
TrEMBLA0A0D3A1Q31e-119A0A0D3A1Q3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F7261e-119A0A3P6F726_BRAOL; Uncharacterized protein
STRINGBo1g006290.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58752241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.14e-55C2H2 family protein