PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02945.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 387aa    MW: 42338.9 Da    PI: 7.6372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02945.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.4e-16204249555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Rsa1.0_02945.1_g00004.1 204 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 249
                              9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-18197260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.34E-17204252No hitNo description
PfamPF000102.5E-13204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-17204257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-18205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSQRVPNYHI DDTPAATVRS TKAADIPLLD YEVAELTWEN GQLGLHGLCP PRVPAPSKYS  60
TGAGGTLESI VDQATRFPNP KPTDELVPSF HHHYSRVGMD ALVPEQQSQP ATGVGSCSDG  120
HPMAGVKRAR VAPEWSASGS QRLTIDTYGF TSTSLDDNSS SGGKPFTKTT NIDDHDSVEE  180
EEEGKQMGGK SSASTKRSRA AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE  240
VIEYLKQLQA QVCMMRRMNM PSMMLPMAMQ QQQQQLQLNL MSSSMGLGLR MGMPGLGLVD  300
LSSMNRAATA TAPNIHANMM QNPFVPMTST SWDASSSTDP RFQSPLIPDP MSAFLACSSQ  360
PTTMEAYSRM AALYQQMQQQ LPPSNPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207212ERKRRD
2208213RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02945.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172291e-174AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259711e-174BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458932.10.0PREDICTED: transcription factor UNE10-like
SwissprotQ8GZ381e-174UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A3P5ZLS60.0A0A3P5ZLS6_BRACM; Uncharacterized protein
STRINGBra000560.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-145bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]