PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02949.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 620aa    MW: 69270 Da    PI: 6.3872
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02949.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.67.1e-113844661299
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                              ++++ ++p + ++++g+    +  ++++ ++++sW++ l  +k + + ++ ++ W eFv++n L + D+++F++++++ f   v++
  Rsa1.0_02949.1_g00003.1 384 SKSMRIIPEELVRSNGEA--FEHRVVFNVRWNNSWQLWL--QKERHGlFMVEEDWDEFVDDNLLGADDILLFTHQDTMYF--EVRI 463
                              4466799********855..6668***************..88877789************************9887888..8888 PP

                              E-S CS
                       B3  97 frk 99 
                              f+k
  Rsa1.0_02949.1_g00003.1 464 FKK 466
                              876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.70.98.109.7E-1305328IPR014718Glycoside hydrolase-type carbohydrate-binding
SuperFamilySSF746501.44E-1077327IPR011013Galactose mutarotase-like domain
CDDcd090191.15E-15713328No hitNo description
PfamPF012633.0E-9113327IPR008183Aldose 1-/Glucose-6-phosphate 1-epimerase
Gene3DG3DSA:2.40.330.101.9E-13368468IPR015300DNA-binding pseudobarrel domain
CDDcd100175.24E-11371465No hitNo description
SuperFamilySSF1019363.73E-13371467IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.7E-15372467IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912373467IPR003340B3 DNA binding domain
PfamPF023629.5E-9384466IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-8519604IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-6520607IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.04526616IPR003340B3 DNA binding domain
PROSITE profilePS508636.4583620IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016853Molecular Functionisomerase activity
GO:0030246Molecular Functioncarbohydrate binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MADQSKNNTP EIFELNNESM HVKISNYGAT ITSLSVPDKN GKLADVVLGF DSVDPYVKVL  60
APYFGCIVGR VANRIKEGKF SLNGVDYTLP INKPPNSLHG GNKGFDKKIW DVAGHKKDGE  120
KPFIIFKYHS ADGEEGYPGA VAVTATYTLT SATTMRLDME ATPENKDTPI NLAQHTYWNL  180
AGHDSGNILD HMIQIWGSHV TPVDQFTVPT GEILPVKGTP FDFTEEKRIG ESIGEVGLGY  240
DHNYVLDCPD QEKEGLKHAA KLRDGASSRV MDLWTNAPGV QFYTGNYVNG VVGKGNAVYG  300
KHAGVCLETQ GFPNAINQSN FPSVVVKAAL CNIRATRPYD VKGIGERLGN RSSFQETVES  360
EIRENMSNPS SFTKSLSLGQ NWKSKSMRII PEELVRSNGE AFEHRVVFNV RWNNSWQLWL  420
QKERHGLFMV EEDWDEFVDD NLLGADDILL FTHQDTMYFE VRIFKKDGKE ITSVPLEVEP  480
ETQPFHQETT PASASASVGT SSRARKGFAH VKNPKRYLLN PRNPYFQKKL TKSNTVLYMT  540
TWVIEEYELE FSPPNTHIYF LLPDGEKLNG YTKNYGGSHG FLGWAAVCER YNLKTGDTVV  600
CELELSGRLV SAVRVHFVNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1snz_A1e-81532716328aldose 1-epimerase
1snz_B1e-81532716328aldose 1-epimerase
1so0_A1e-81532716328aldose 1-epimerase
1so0_B1e-81532716328aldose 1-epimerase
1so0_C1e-81532716328aldose 1-epimerase
1so0_D1e-81532716328aldose 1-epimerase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02949.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0399320.0AY039932.1 Arabidopsis thaliana putative aldose 1-epimerase (At3g17940) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434392.10.0PREDICTED: aldose 1-epimerase-like
TrEMBLA0A398AXU40.0A0A398AXU4_BRACM; Aldose 1-epimerase
STRINGBra021285.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.39e-98B3 family protein