PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02958.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 700aa    MW: 78511.9 Da    PI: 7.464
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02958.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3504.84.3e-1541625491354
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                              +el++r w+d+m+lkrlke++++++  ke  ++a+k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+g
  Rsa1.0_02958.1_g00001.1 162 DELERRVWRDKMRLKRLKEQQQSRC--KEG-ADASKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTG 244
                              79*********************99..888.99***************************************************** PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXX.....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HH CS
                     EIN3  87 asdsLraWWkekvefdrngpaaisky.qaknlilsgessl.qtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvep 170
                              asd+Lr+WWk+kv+fdrngpaai+ky + +n+i++g+s++ ++    ++h+l+elqDTtlgSLLsalmqhcdppqrrfplekgv+p
  Rsa1.0_02958.1_g00001.1 245 ASDNLREWWKDKVRFDRNGPAAIAKYgAENNNIAGGGSNDcNSLVGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPP 330
                              **************************966666776666655999****************************************** PP

                              HH---S--HHHHHHT--TT--..-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT CS
                     EIN3 171 PWWPtGkelwwgelglskdqg.tppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeek 255
                              PWWP+G+e+ww++lgl++dq  +ppykkphdlkkawkv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes+++l+++nqee 
  Rsa1.0_02958.1_g00001.1 331 PWWPNGREDWWPQLGLPNDQApPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEV 416
                              *********************9**************************************************************** PP

                              -S--XXXX..XX..XXXXXXXXXXXXXXXXXXXX..XXXXXX.XXXXXXXXXX.............................XXXX CS
                     EIN3 256 ecatvsah..ss..slrkqspkvtlsceqkedve..gkkeskikhvqavktta.............................gfpv 306
                               ++++++   ++  s++ +s ++ +++ +++dve  +k++++  +v++ k +                              ++++
  Rsa1.0_02958.1_g00001.1 417 VAQELYPGscPPlsSSSLGSGSLLIDDCSEYDVEcfEKEHQQGFDVEELKPEIvvsmnhptsfgicrmqqfpvkeevvatvgNLDF 502
                              *******96522645555****************987777777899999987799******************************* PP

                              XXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                     EIN3 307 vrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                              +rkrk++++ +  ++++    tc++ q+++s+ +l+f+d++s++++++
  Rsa1.0_02958.1_g00001.1 503 ARKRKQNNDLNVLMMER-PGFTCENGQCPHSKINLGFQDRSSRDNHQM 549
                              *****888877777766.67**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.6E-128162415No hitNo description
Gene3DG3DSA:1.10.3180.101.4E-73289424IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167687.06E-61293417IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0042742Biological Processdefense response to bacterium
GO:0071281Biological Processcellular response to iron ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MSLPELSAVS TVINSLRDAQ LRPQTFRQLL LRLRLAHAVS VVSIAASARS TTPNSSAVKP  60
PPSDLPPQRT SPPRCRPAIP SLNSLPSPTP RSLSSLHSSG SSLLRSNRIG LDLGMMMFNE  120
MGMYGSMDFL SSTSHAETEV CPFPQDHPLV EDDYTDDEVD VDELERRVWR DKMRLKRLKE  180
QQQSRCKEGA DASKQRQSQE QARRKKMSRA QDGILKYMLK MMEVCKAQGF VYGIIPEKGK  240
PVTGASDNLR EWWKDKVRFD RNGPAAIAKY GAENNNIAGG GSNDCNSLVG PTPHTLQELQ  300
DTTLGSLLSA LMQHCDPPQR RFPLEKGVPP PWWPNGREDW WPQLGLPNDQ APPPPYKKPH  360
DLKKAWKVGV LTAVIKHMSP DIAKIRKLVR QSKCLQDKMT AKESATWLAI INQEEVVAQE  420
LYPGSCPPLS SSSLGSGSLL IDDCSEYDVE CFEKEHQQGF DVEELKPEIV VSMNHPTSFG  480
ICRMQQFPVK EEVVATVGNL DFARKRKQNN DLNVLMMERP GFTCENGQCP HSKINLGFQD  540
RSSRDNHQMV CPYRDNRLAY GAAPKFHTSE VKAVVVSQQS QPYPQPVQPT DLSGYGVPKN  600
GQKMITELMA MYDRNVQSSQ ASNQSMIVDS TAAQNYQEQQ LSFNRNQMFM QQGNSEINNQ  660
SQIVFDSTSF DVASFDYKND WQAGVMEGMG KQQQDVSIWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-822924252134Protein ETHYLENE INSENSITIVE 3
4zds_B2e-822924252134Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02958.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893330.0AC189333.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038M13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476804.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ9SLH00.0EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBLA0A0D3B7E60.0A0A0D3B7E6_BRAOL; Uncharacterized protein
STRINGBo3g041690.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21352879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.10.0ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kim HG, et al.
    GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling.
    Plant Physiol., 2013. 163(4): p. 1776-91
    [PMID:24170202]
  3. Zhang GB,Yi HY,Gong JM
    The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation.
    Plant Cell, 2014. 26(10): p. 3984-98
    [PMID:25326291]
  4. Wang J, et al.
    Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation.
    J Integr Plant Biol, 2015. 57(8): p. 708-21
    [PMID:25494721]
  5. Qing D, et al.
    Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis.
    Mol Plant, 2016. 9(1): p. 158-174
    [PMID:26476206]
  6. Poulios S,Vlachonasios KE
    Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana.
    J. Exp. Bot., 2016. 67(3): p. 905-18
    [PMID:26596766]
  7. Shen X,Li Y,Pan Y,Zhong S
    Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence.
    Front Plant Sci, 2016. 7: p. 1571
    [PMID:27822221]
  8. Abozeid A, et al.
    Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 253
    [PMID:28286514]
  9. Feng Y, et al.
    Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839
    [PMID:29233944]
  10. Harkey AF, et al.
    Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene.
    Plant Physiol., 2018. 176(3): p. 2095-2118
    [PMID:29259106]