PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02987.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 213aa    MW: 24309.4 Da    PI: 6.4056
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02987.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48.2e-1630120198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffkv +ps + ++ +l++p kf++  g + + s  +tl+++ g + ++kl  ++ +++++l  GW+eF++a+ + eg f+ F ++g
  Rsa1.0_02987.1_g00005.1  30 FFKVVLPSTMKRN-MLMIPPKFVKLQG-S-TLSEFVTLKTPVGFRRSIKL--KRIGEEIWLHVGWSEFAEAHSIGEGHFLFFDYKG 110
                              7888877766665.6********5555.4.48889***************..********************************** PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                              +s+f   v++f+
  Rsa1.0_02987.1_g00005.1 111 NSSF--SVMIFN 120
                              *999..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2224124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-2124124IPR015300DNA-binding pseudobarrel domain
CDDcd100178.08E-1428120No hitNo description
PROSITE profilePS5086312.16729122IPR003340B3 DNA binding domain
PfamPF023621.5E-1330120IPR003340B3 DNA binding domain
SMARTSM010193.5E-1630122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVTTRQTKAR VTTFSHRRQL PETDSSVKKF FKVVLPSTMK RNMLMIPPKF VKLQGSTLSE  60
FVTLKTPVGF RRSIKLKRIG EEIWLHVGWS EFAEAHSIGE GHFLFFDYKG NSSFSVMIFN  120
VSACEIDYPL DAVHISDSDD DVMDVTDEGF LGTQGARRND QSVDGGGTEH NSNKRPRDEE  180
FEKILNDVDG INSIKPLEEE EEGKRVFRGH QFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02987.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2401021e-139AC240102.1 Sisymbrium irio clone SIR-40E09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492012.11e-157PREDICTED: B3 domain-containing protein At3g18960
SwissprotQ84R274e-98Y3896_ARATH; B3 domain-containing protein At3g18960
TrEMBLA0A3P6F1G91e-122A0A3P6F1G9_BRAOL; Uncharacterized protein
STRINGBra022374.1-P1e-118(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18960.12e-99B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]