PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02994.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family RAV
Protein Properties Length: 341aa    MW: 37868.7 Da    PI: 9.8579
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02994.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.12.1e-1359107155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s+ykGV   + +grW A+I++      ++r++lg+f  +eeAa  ++ a++k++g
  Rsa1.0_02994.1_g00004.1  59 SKYKGVVPQP-NGRWGAQIYVK-----HQRVWLGTFNDEEEAAHSYDIAARKFRG 107
                              89****9888.8*********3.....5*************************98 PP
2B31054e-33180279196
                              EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                              f+kv tpsdv+k++rlv+pk+ ae+h    +++ ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F
  Rsa1.0_02994.1_g00004.1 180 FEKVVTPSDVGKLNRLVIPKHQAEKHfplpSLSVNKGVLINFEDATGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTF 265
                              99****************************7777899************************************************* PP

                              EE-SSSEE..EEEE CS
                       B3  83 kldgrsefelvvkv 96 
                              +++  s+++l++++
  Rsa1.0_02994.1_g00004.1 266 ERSTGSDRQLCIGW 279
                              *8877998888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-659107IPR001471AP2/ERF domain
CDDcd000182.02E-2459114No hitNo description
SuperFamilySSF541712.55E-1759115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-2060115IPR001471AP2/ERF domain
PROSITE profilePS5103219.94160115IPR001471AP2/ERF domain
SMARTSM003804.1E-2760121IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.4E-40174282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.22E-32177277IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-30179277No hitNo description
PROSITE profilePS5086314.663180283IPR003340B3 DNA binding domain
SMARTSM010191.3E-26180283IPR003340B3 DNA binding domain
PfamPF023621.2E-29180279IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MVSSCTDESS STSESFSPPT ATATKFSAPP LPPSGSGGSN VVLDSKNGVE TDSRKLPSSK  60
YKGVVPQPNG RWGAQIYVKH QRVWLGTFND EEEAAHSYDI AARKFRGRDA VVNFKTFLTA  120
EEDDNGELCF LEAHSKAEIV DMLRKHTYAE ELAQSNKRNG ANTNTTTQND TVLRTREVLF  180
EKVVTPSDVG KLNRLVIPKH QAEKHFPLPS LSVNKGVLIN FEDATGKVWR FRYSYWNSSQ  240
SYVLTKGWSR FVKEKNLRAG DVVTFERSTG SDRQLCIGWK IRSGLSKNPV QVVVRLFGVD  300
IFNVTSAKPS NVVDACGGKR SREVDMFALR CSKKHAIINA L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-6017728411119DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02994.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468331.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotP822800.0RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A3P6D8B20.0A0A3P6D8B2_BRAOL; Uncharacterized protein
STRINGBo2g061320.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84827121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-176related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]