PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_02999.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ARR-B
Protein Properties Length: 430aa    MW: 48732 Da    PI: 6.5105
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_02999.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like635.5e-20232289155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilel...mkvkgLtlehvkSHLQkYRl 55 
                              k r+ Wt +L e+F+ea++  GG++kA Pk +l++   +++kgLt+++v SHLQk+Rl
  Rsa1.0_02999.1_g00001.1 232 KSRMTWTGDLQEKFLEAIKIVGGPKKASPKILLKClqdLNIKGLTRNNVSSHLQKHRL 289
                              68****************************9887622268*****************8 PP
2Response_reg57.96e-20361411107
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vd + + + ++++++e+  y +v++ +d+eea++ l +++  +++++ D  mpg++Gl++l  i ++  +lp+i++++ ++ e
  Rsa1.0_02999.1_g00001.1  36 VLVVDASLSTLLNMKEIMERCAY-QVTAYADAEEAIAFLTNSKheINIVIWDYHMPGINGLQALAIIGSKM-DLPVIIMSDDDQTE 119
                              899********************.***************776667**********************6654.8************* PP

                              HHHHHHHTTESEEEESS--HHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeel 107
                               + +a+  Ga  +++Kp+ +e +
  Rsa1.0_02999.1_g00001.1 120 SVMDAMVHGACHYVMKPVRKE-I 141
                              *****************7655.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.13E-2732156IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.1E-3134182No hitNo description
SMARTSM004484.0E-1734145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011035.22835150IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-1636142IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.01E-1637145No hitNo description
SuperFamilySSF466894.12E-11230292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-18231293IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-15232289IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSIRNITEDG DKTLLLQQEI SEISSPLSEF PPSTNVLVVD ASLSTLLNMK EIMERCAYQV  60
TAYADAEEAI AFLTNSKHEI NIVIWDYHMP GINGLQALAI IGSKMDLPVI IMSDDDQTES  120
VMDAMVHGAC HYVMKPVRKE IIATIWQHIV RKRMKSKTGL VPPAVAHDDC SKQEKEEATK  180
KRRRTGIEET QPMQSDLVKS NGSDQDSDDS RSVSNCNCEQ SINNKNARYF KKSRMTWTGD  240
LQEKFLEAIK IVGGPKKASP KILLKCLQDL NIKGLTRNNV SSHLQKHRLS LEQNQIPQQF  300
PETDWSSLCR PSPFLGMNNG FIAPSSFMNG PAVYPVQENQ YQNGYLSMNN NHFVTNNMPG  360
LSYFNNDHHL QQQHQQRQYQ LPNQVNNMKR RNEPQQAYNG IGLTDLESST YPSLPNDLNE  420
FLFDGYNFGN
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_02999.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450308.10.0PREDICTED: putative two-component response regulator ARR19
SwissprotQ9M9B91e-128ARR19_ARATH; Putative two-component response regulator ARR19
TrEMBLA0A3P6BPS20.0A0A3P6BPS2_BRACM; Uncharacterized protein
STRINGBo00641s030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM131371629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49190.15e-69response regulator 19