PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03001.1_g00002.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GeBP

Protein Properties

Length: 413aa MW: 44784.8 Da PI: 4.4953

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03001.1_g00002.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	111.9	4.2e-35	117	216	2	98
DUF573 2 lfqrlwseeDeivlLqGlidf.kaktgk.spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 lfqrlw++eDei lL+G++d+ ++++g ++ d+ fye++k++++++++k+qlveK+rrLKkK+++ ++k sgke++f+++h Rsa1.0_03001.1_g00002.1 117 LFQRLWTDEDEIELLRGFLDYiASHRGGgGSHPpDTAPFYEQIKSRLQLEFNKNQLVEKLRRLKKKYRNVMSKFGSGKEVVFKSPH 202 79*****************7667776655556************************************************ PP DUF573 85 dqkifelskkiWgs 98 dq +f++s+kiW++ Rsa1.0_03001.1_g00002.1 203 DQTTFDISRKIWNQ 216 **********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.0E-32	118	215	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MPSDERDAVF SLESPELEED GSAGAGVGGG GGETDSDEEE AAMPAETNVP DEEDDDHEYE 60 DPNSPLVSAT VTVALPAGSA VPVAAIPVDS DPKWHRTTTE IVRPRPPPPT IDDSRRLFQR 120 LWTDEDEIEL LRGFLDYIAS HRGGGGSHPP DTAPFYEQIK SRLQLEFNKN QLVEKLRRLK 180 KKYRNVMSKF GSGKEVVFKS PHDQTTFDIS RKIWNQSGKI IGFEDNSVME FEETNNVNGN 240 AASVEIDSEN VKVSRKRSRS RIGKIDEDRP VSVSDGPVMP NVNNLNENVS SAFGELSDGR 300 NLGGLIEETV KSCVSPLIKE MMNGTTGMMM AAVGGYPGGG GGGAHAMGVL SPMLMPSVNP 360 LGFGGGNGGG GVGDERWRRQ QILELEVYSR RLELVQEQIR ATVNELKTMP SGG

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MPSDERDAVF SLESPELEED GSAGAGVGGG GGETDSDEEE AAMPAETNVP DEEDDDHEYE  60
DPNSPLVSAT VTVALPAGSA VPVAAIPVDS DPKWHRTTTE IVRPRPPPPT IDDSRRLFQR  120
LWTDEDEIEL LRGFLDYIAS HRGGGGSHPP DTAPFYEQIK SRLQLEFNKN QLVEKLRRLK  180
KKYRNVMSKF GSGKEVVFKS PHDQTTFDIS RKIWNQSGKI IGFEDNSVME FEETNNVNGN  240
AASVEIDSEN VKVSRKRSRS RIGKIDEDRP VSVSDGPVMP NVNNLNENVS SAFGELSDGR  300
NLGGLIEETV KSCVSPLIKE MMNGTTGMMM AAVGGYPGGG GGGAHAMGVL SPMLMPSVNP  360
LGFGGGNGGG GVGDERWRRQ QILELEVYSR RLELVQEQIR ATVNELKTMP SGG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	255	260	KRSRSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03001.1_g00002.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC007627	6e-45	AC007627.3 Genomic Sequence For Arabidopsis thaliana Clone F15F15, Chromosome V, complete sequence.
GenBank	AK117998	6e-45	AK117998.1 Arabidopsis thaliana At5g28040 mRNA for unknown protein, complete cds, clone: RAFL19-20-B12.
GenBank	BT005356	6e-45	BT005356.1 Arabidopsis thaliana At5g28040 mRNA, complete cds.
GenBank	CP002688	6e-45	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018463759.1	0.0	PREDICTED: LOW QUALITY PROTEIN: probable transcription factor At5g28040
Swissprot	F4K5T4	0.0	STKLU_ARATH; Probable transcription factor At5g28040
TrEMBL	A0A3P5Z4Z3	0.0	A0A3P5Z4Z3_BRACM; Uncharacterized protein (Fragment)
TrEMBL	M4D0I8	0.0	M4D0I8_BRARP; Uncharacterized protein
STRING	AT5G28040.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3098	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	1e-152	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586 [PMID:29264953]