PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03010.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 217aa    MW: 25188 Da    PI: 4.8424
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03010.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-1957110457
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                              ++++t+eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa +k+
  Rsa1.0_03010.1_g00001.1  57 KRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRALWKN 110
                              4589************************************************95 PP
2HD-ZIP_I/II1192.6e-3856146292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +kr+l++eqv++LE+sF  e+kLe+erK +la eLgl+prqvavWFqnrRA +k+k+lE++y++Lk+++d+++ +++rLe+e  +L
  Rsa1.0_03010.1_g00001.1  56 RKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRALWKNKRLEEEYNKLKNSHDNVVGDKCRLESELLQL 141
                              8************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                              +e+l 
  Rsa1.0_03010.1_g00001.1 142 KEQLY 146
                              **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.7E-1854115IPR001356Homeobox domain
PROSITE profilePS5007115.59756111IPR001356Homeobox domain
SuperFamilySSF466893.42E-1756121IPR009057Homeodomain-like
CDDcd000862.36E-1556112No hitNo description
PfamPF000462.1E-1657110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.9E-2058118IPR009057Homeodomain-like
PRINTSPR000315.1E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000315.1E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MNHTMDDQNL AFISQLYPDV YTQILPQQGA VKPPKRRRKK SKGAVDTGDV SNCFFRKRKL  60
TDEQVNMLEM SFGDEHKLES ERKDRLAAEL GLDPRQVAVW FQNRRALWKN KRLEEEYNKL  120
KNSHDNVVGD KCRLESELLQ LKEQLYDAER EIQRLAERVE RGSSNSPISS SVSVEANETP  180
FFGDYNVGDD GDDYDNLFYP VPENTYIDGV EWASLYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13758RKKSKGAVDTGDVSNCFFRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03010.1_g00001.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895491e-114AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481856.11e-148PREDICTED: homeobox-leucine zipper protein ATHB-40-like isoform X1
SwissprotO232081e-128ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A398ANQ71e-134A0A398ANQ7_BRACM; Uncharacterized protein
STRINGBo1g005450.11e-135(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22082677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.14e-93homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]