PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03034.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 943aa    MW: 104772 Da    PI: 6.8855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03034.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.3e-16728778155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                              + y+GVr++  +g+WvAeIr+p     +   r +lg+f + +eAa a+++a++ l+g
  Rsa1.0_03034.1_g00001.1 728 CSYRGVRQRT-WGKWVAEIREP-----CrgSRLWLGTFRSSYEAALAYDEAARDLYG 778
                              67*****999.**********8.....337**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF495032.77E-3726174IPR008972Cupredoxin
TIGRFAMsTIGR033892.0E-25827568IPR017761Laccase
CDDcd138494.89E-7031147No hitNo description
PfamPF077321.9E-4136148IPR011707Multicopper oxidase, type 3
Gene3DG3DSA:2.60.40.4203.0E-2937166IPR008972Cupredoxin
SuperFamilySSF495031.25E-41155343IPR008972Cupredoxin
CDDcd138754.20E-86162309No hitNo description
PfamPF003943.4E-38162311IPR001117Multicopper oxidase, type 1
Gene3DG3DSA:2.60.40.4209.2E-53167344IPR008972Cupredoxin
Gene3DG3DSA:2.60.40.4209.0E-52345572IPR008972Cupredoxin
SuperFamilySSF495037.33E-45351419IPR008972Cupredoxin
CDDcd138976.28E-85413552No hitNo description
PfamPF077311.1E-40418552IPR011706Multicopper oxidase, type 2
SuperFamilySSF495037.33E-45446568IPR008972Cupredoxin
PROSITE patternPS000790527547IPR033138Multicopper oxidases, conserved site
PROSITE patternPS000800532543IPR002355Multicopper oxidase, copper-binding site
CDDcd000182.42E-27728787No hitNo description
PfamPF008471.1E-10728778IPR001471AP2/ERF domain
PROSITE profilePS5103220.916729786IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-18729787IPR016177DNA-binding domain
SMARTSM003801.5E-32729792IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-28729787IPR001471AP2/ERF domain
PRINTSPR003676.0E-8730741IPR001471AP2/ERF domain
PRINTSPR003676.0E-8752768IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046274Biological Processlignin catabolic process
GO:0046688Biological Processresponse to copper ion
GO:0055114Biological Processoxidation-reduction process
GO:0048046Cellular Componentapoplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005507Molecular Functioncopper ion binding
GO:0052716Molecular Functionhydroquinone:oxygen oxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 943 aa     Download sequence    Send to blast
MEIIKSFFCF ISLTILLVFT SMGEANRAHH HEFIIQATKV KRLCETHNSI TVNGMFPGPQ  60
LVINNGDTLV VKVINRARYN VTIHWHGVRQ MRTGWADGPE FVTQCPIRPG SSYTYRFTIQ  120
GQEGTLWWHA HSSWLRATVY GSLLILPPAG SSYPFQNPHR NVPLLLGEWW DGNPVDVLRE  180
ATRTGAAPNI SDAYTINGQP GDLYKCSSKD TTIVPINVGE TILLRVINAA LNQPLFFTVA  240
NHKFTVIGAD ASYLKPFTTN AIVLGPGQTT DVLITGDQPP NRYYMAARAY QSAQNAPFGN  300
TTTTAILQYK AAPCCSGAKP IMPLLPAYND TNTVTRFSQS FRSLKRAEVP TELDENLFIT  360
IGLGLNNCPK NFRSRRCQGP NGTRFTSSMN NVSFALPSNY SLLQAHHHAI PGVFTTDFPA  420
KPPVKFDYTG SNISRSLYQP VRGTKLYKLK YGSRVQIVLQ DTGIVTPENH PIHLHGYDFY  480
IVAEGFGNFN PKKDTAKFNL EDPPLRNTVG VPVNGWAVIR FVADNPGVWI MHCHLDAHIS  540
WGLAMAFLVE NGKGLLETME EPPADLPVAK EAGVYRLGFF VNINLVLKFR TFGIVSLYRL  600
SLCKWGYVKE RTFAAKKIES YLVILCTDME YSASEFCSVL VCANGVIHEV LWVSKESYFS  660
DSLYWKRKPR DGGTSVAETL QKWREYNEQI EAASCNDDGG LKPIRKAPPK GSRKGCMKGK  720
GGPENLICSY RGVRQRTWGK WVAEIREPCR GSRLWLGTFR SSYEAALAYD EAARDLYGKS  780
ARLNLPDIFT AGGSVTTLSN ESEVCAVEET NVRSGLVQVK EEDVSDEYVF LNSSQCVKEE  840
VSVLDSVDTF GNGNEHEPWD FGVGEMFDVD EVLGFLGETN VSGQDDRSSN FTCQMQFPDA  900
NLLGSLDQTE TAHPGVGYGY PIVQPIEMDN SCVDLDNSST ILT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1aoz_A1e-664454719521ASCORBATE OXIDASE
1aoz_B1e-664454719521ASCORBATE OXIDASE
1aso_A1e-664454719521ASCORBATE OXIDASE
1aso_B1e-664454719521ASCORBATE OXIDASE
1asp_A1e-664454719521ASCORBATE OXIDASE
1asp_B1e-664454719521ASCORBATE OXIDASE
1asq_A1e-664454719521ASCORBATE OXIDASE
1asq_B1e-664454719521ASCORBATE OXIDASE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtLignin degradation and detoxification of lignin-derived products. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03034.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895960.0AC189596.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464840.10.0PREDICTED: laccase-5-like
SwissprotQ9SIY80.0LAC5_ARATH; Laccase-5
TrEMBLA0A397ZP150.0A0A397ZP15_BRACM; Laccase
STRINGBo4g190050.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-113ERF family protein
Publications ? help Back to Top
  1. Sibout R, et al.
    CINNAMYL ALCOHOL DEHYDROGENASE-C and -D are the primary genes involved in lignin biosynthesis in the floral stem of Arabidopsis.
    Plant Cell, 2005. 17(7): p. 2059-76
    [PMID:15937231]
  2. McCaig BC,Meagher RB,Dean JF
    Gene structure and molecular analysis of the laccase-like multicopper oxidase (LMCO) gene family in Arabidopsis thaliana.
    Planta, 2005. 221(5): p. 619-36
    [PMID:15940465]
  3. Pourcel L, et al.
    TRANSPARENT TESTA10 encodes a laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat.
    Plant Cell, 2005. 17(11): p. 2966-80
    [PMID:16243908]
  4. Cai X, et al.
    Mutant identification and characterization of the laccase gene family in Arabidopsis.
    J. Exp. Bot., 2006. 57(11): p. 2563-9
    [PMID:16804053]
  5. Abdel-Ghany SE,Pilon M
    MicroRNA-mediated systemic down-regulation of copper protein expression in response to low copper availability in Arabidopsis.
    J. Biol. Chem., 2008. 283(23): p. 15932-45
    [PMID:18408011]
  6. Turlapati PV,Kim KW,Davin LB,Lewis NG
    The laccase multigene family in Arabidopsis thaliana: towards addressing the mystery of their gene function(s).
    Planta, 2011. 233(3): p. 439-70
    [PMID:21063888]
  7. Berthet S, et al.
    Disruption of LACCASE4 and 17 results in tissue-specific alterations to lignification of Arabidopsis thaliana stems.
    Plant Cell, 2011. 23(3): p. 1124-37
    [PMID:21447792]
  8. Ranocha P, et al.
    Biochemical characterization, molecular cloning and expression of laccases - a divergent gene family - in poplar.
    Eur. J. Biochem., 1999. 259(1-2): p. 485-95
    [PMID:9914531]