PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03044.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 290aa    MW: 31655 Da    PI: 6.2285
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03044.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17211246134
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++Cgt++  Tp++Rrgp+g++tLCnaCGl+++ kg
  Rsa1.0_03044.1_g00003.1 211 CRHCGTSEnsTPMMRRGPEGPRTLCNACGLMWANKG 246
                              *********************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.8E-967102IPR010399Tify domain
PROSITE profilePS5132014.66167102IPR010399Tify domain
PfamPF062003.5E-1172101IPR010399Tify domain
PfamPF062036.0E-15135177IPR010402CCT domain
PROSITE profilePS5101712.431135177IPR010402CCT domain
SMARTSM004013.1E-10205258IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.684205261IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.99E-13208270No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15210252IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.09E-15211264No hitNo description
PROSITE patternPS003440211238IPR000679Zinc finger, GATA-type
PfamPF003202.6E-15211246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDDDGLHGNM HNGGDEHPLH VQYEHHGMMD ASDHADDNDD GMNGGLETDI PSHLGNPSDH  60
RGEVVDRGGG GDQLTLSYQG QVYVFDHVLP DKVQAVLLLL GGREVPQTLP TTLGSPHQNN  120
RGLSGTPQRL SAPQRQASLL RFREKRKGRN FGPTIRYTVR KEVALRMQRK KGQFTSAKSS  180
IEDPSSTGSD WGSGQSWALE GCETQKPEAL CRHCGTSENS TPMMRRGPEG PRTLCNACGL  240
MWANKGALRD LSKAPLPQIT RNQPANNNDD SNLDADQMMV VVADDISNSN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03044.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486783.10.0PREDICTED: GATA transcription factor 24-like isoform X2
RefseqXP_018486784.10.0PREDICTED: GATA transcription factor 24-like isoform X2
SwissprotQ8GXL71e-150GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A078IM270.0A0A078IM27_BRANA; BnaC05g30820D protein
TrEMBLA0A0D3CHP90.0A0A0D3CHP9_BRAOL; Uncharacterized protein
STRINGBo5g103560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36842659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-130ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]