PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03112.1_g00001.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

TCP

Protein Properties

Length: 351aa MW: 40247.8 Da PI: 5.9212

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03112.1_g00001.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	127.2	1.7e-39	84	231	2	129
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec.....eaess 78 a+kkdrhski T +g+RdRRvRls+ +a++fFdLqd+LGfdk+skt++WLl+++k+aikel++ + +++ ++ e +++ Rsa1.0_03112.1_g00001.1 84 AVKKDRHSKIQTGQGLRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSKRAIKELVQEkklnN-TNE-DFrniggEVGEE 167 89************************************************************66642.222.112344422222 PP TCP 79 sssasnsssg............kaaksaakskksqksaasalnlak.esrakarararertrek 129 ++++++++ + ++ + k+ +++k + +++n++ s+akar +are tre Rsa1.0_03112.1_g00001.1 168 EEEEEEDGDKrfvygsspdsceEEVVCEVKKAHKRKTKIEVSNISSkGSNAKARGKAREITREM 231 22222222225667788855543333333344444444444555445777*******99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-39	85	231	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.52	86	144	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MSFSNNDYNN GNNRVYPLSL YFSPLAGYQD IIRSPYNHQP TPSPGHMASA VPESLINYMT 60 FSSNHAVNQQ GFEIPEVSRE IKKAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM 120 LGFDKASKTL DWLLKKSKRA IKELVQEKKL NNTNEDFRNI GGEVGEEEEE EEEDGDKRFV 180 YGSSPDSCEE EVVCEVKKAH KRKTKIEVSN ISSKGSNAKA RGKAREITRE MTYDHPETIS 240 EITQKTEIMD QPKRSIIFNE GEDMIHSLYK EATQEFESQE CILSKTKVNL PTNMDHSYNQ 300 NYETSMLKDQ GSSSNYNNIL PQNLDFYYDQ NPFIDQPFCA ATNTSFPRGF P

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MSFSNNDYNN GNNRVYPLSL YFSPLAGYQD IIRSPYNHQP TPSPGHMASA VPESLINYMT  60
FSSNHAVNQQ GFEIPEVSRE IKKAVKKDRH SKIQTGQGLR DRRVRLSIGI ARQFFDLQDM  120
LGFDKASKTL DWLLKKSKRA IKELVQEKKL NNTNEDFRNI GGEVGEEEEE EEEDGDKRFV  180
YGSSPDSCEE EVVCEVKKAH KRKTKIEVSN ISSKGSNAKA RGKAREITRE MTYDHPETIS  240
EITQKTEIMD QPKRSIIFNE GEDMIHSLYK EATQEFESQE CILSKTKVNL PTNMDHSYNQ  300
NYETSMLKDQ GSSSNYNNIL PQNLDFYYDQ NPFIDQPFCA ATNTSFPRGF P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	2e-13	91	144	1	54	Putative transcription factor PCF6
5zkt_B	2e-13	91	144	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in petal morphogenesis. {ECO:0000269\|PubMed:17940055}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03112.1_g00001.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018444831.1	0.0	PREDICTED: transcription factor TCP1
Swissprot	Q9FYG7	1e-155	TCP1_ARATH; Transcription factor TCP1
TrEMBL	M4CJ28	0.0	M4CJ28_BRARP; Uncharacterized protein
STRING	Bra004212.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6733	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-144	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]