PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03136.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 244aa    MW: 27218.6 Da    PI: 9.4375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03136.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-171464148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                             +g+WT eEd++l+d+++ +G g+W++ ++  g   + R++k+c++rw +yl
  Rsa1.0_03136.1_g00003.1 14 KGAWTNEEDQRLIDYIRIHGEGCWRSLPKSAGltrLLRCGKSCRLRWINYL 64
                             79***********************************************97 PP
2Myb_DNA-binding53.94.1e-1770114147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg+++ eEd+ +++++ +lG++ W++Ia +++ gRt++++k++w+++
  Rsa1.0_03136.1_g00003.1  70 RGNFSDEEDKVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 114
                              89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22567IPR009057Homeodomain-like
PROSITE profilePS5129415.178964IPR017930Myb domain
SuperFamilySSF466891.37E-2813111IPR009057Homeodomain-like
SMARTSM007175.2E-131366IPR001005SANT/Myb domain
PfamPF002492.2E-151464IPR001005SANT/Myb domain
CDDcd001672.75E-111664No hitNo description
PROSITE profilePS5129427.23265119IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2768119IPR009057Homeodomain-like
SMARTSM007176.0E-1669117IPR001005SANT/Myb domain
PfamPF002492.8E-1570114IPR001005SANT/Myb domain
CDDcd001675.07E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTNE EDQRLIDYIR IHGEGCWRSL PKSAGLTRLL RCGKSCRLRW  60
INYLRPDLKR GNFSDEEDKV IIKLHSLLGN KWSLIAGRLP GRTDNEIKNY WNTHIKRKLL  120
SHGIDPQTHR PIKDSETVPS QLSTAVIVPP QNDAVEKSFT VRQKTENFSD NVASTSGTTT  180
DEDLQQNGGC YYNDYSGDRE LNLDLTLGSG STSFVRSGRK SGTGSSADSK PGRVPVMAAR  240
LSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29141197108B-MYB
1h8a_C9e-291311926128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03136.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018474561.10.0PREDICTED: transcription repressor MYB6-like isoform X1
SwissprotQ388511e-134MYB6_ARATH; Transcription repressor MYB6
TrEMBLA0A3P6A9821e-145A0A3P6A982_BRACM; Uncharacterized protein
STRINGBo3g044210.11e-141(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-136myb domain protein 6