PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03137.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 460aa    MW: 51051.7 Da    PI: 8.522
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03137.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.96.4e-24959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienks rqvtfskRrng++ KA  LSvLCda va++++s +gkly +ss
  Rsa1.0_03137.1_g00002.1  9 KRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSS 59
                             79***********************************************96 PP
2K-box37.78.6e-141341914299
                    K-box  42 dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                              ++++ s+  L qLe+qLe++l+  R++K+el+l+ +e+l++kek l+een+ L +++e
  Rsa1.0_03137.1_g00002.1 134 NVDNVSVGSLVQLEEQLENALSVTRARKTELMLKLVENLKEKEKLLEEENHVLASQME 191
                              567789999********************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-35160IPR002100Transcription factor, MADS-box
CDDcd002655.46E-332104No hitNo description
SuperFamilySSF554553.14E-25265IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-25323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.261106196IPR002487Transcription factor, K-box
PfamPF014862.9E-9129190IPR002487Transcription factor, K-box
PfamPF011904.2E-14291372No hitNo description
PROSITE patternPS009250292301IPR006040Allergen Ole e 1, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005615Cellular Componentextracellular space
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MGRKKLEIKR IENKSSRQVT FSKRRNGLIE KARQLSVLCD ASVALLVVSA SGKLYSFSSG  60
DKVIKSIGSL RFVCNEMHFG EIYRMAVSLV KILDRYGKQH DDDLKALERQ SNPLNCGSHH  120
ELLELVESKL EESNVDNVSV GSLVQLEEQL ENALSVTRAR KTELMLKLVE NLKEKEKLLE  180
EENHVLASQM EKNNLVRAEA DNMEVSPGQI SDINLPKPTA YFAKETRSRS RLELTTARVD  240
LLRNPNSIPW TAEEQPQVDP ADNKSYVPLI AVMCVSLLPL AAMAAGTPFH IEGCVYCDTC  300
RFGFETIATK YITGAKVKIV CKDSVTLKSE VVGEAVTGRR GRYRVAIKGD RQDQQCLAVL  360
VESPMSNCQF PDPGRSTATV ILTRSNGAAS TRHFANALGF FRDQPLRGCA ALRKHYLADV  420
KLANYGFVSA AFISGRISMV DYRLCSAYNA VEDILINAVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-15161161MEF2 CHIMERA
6bz1_B2e-15161161MEF2 CHIMERA
6bz1_C2e-15161161MEF2 CHIMERA
6bz1_D2e-15161161MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03137.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5428030.0EF542803.1 Sinapis alba flowering locus C protein mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10140.14e-70MIKC_MADS family protein