PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_03152.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

MYB_related

Protein Properties

Length: 291aa MW: 32054 Da PI: 5.0553

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_03152.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.1	1.3e-10	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 ++ WT+ E++ l d+v+++G g W+ I + k R+ ++k++w++ Rsa1.0_03152.1_g00003.1 5 KQMWTPKEEKALRDGVREYGAGKWRGILSDSKygldlKARSNVDLKDKWRN 55 678***********************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.399	1	61	IPR017930	Myb domain
SuperFamily	SSF46689	8.22E-13	3	56	IPR009057	Homeodomain-like
SMART	SM00717	0.0051	4	59	IPR001005	SANT/Myb domain
Pfam	PF00249	9.3E-8	5	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-12	5	56	IPR009057	Homeodomain-like
CDD	cd11660	8.39E-16	6	56	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MGGPKQMWTP KEEKALRDGV REYGAGKWRG ILSDSKYGLD LKARSNVDLK DKWRNIGAGI 60 SGSRKKKAKI AFQNQDEDDD TALAIVAVAN DDNGEQEIVP ASPANDNGGE QQIVPASPVN 120 DDDEGLFTSV DTFILEAITS WKKLLLPNKK SILLRVEEKN NMEPGMKRLV ASRLTHLVNV 180 GTIIRKNNRY KIAPTYAAAE AEQNSPQLLL VGSNENGVKK QGEAFKINGM TEKEASAAAA 240 KALEEAEFAR AEAEEAAREA DRAEAEAEAM QDYAVAVKKV WNDWMHGQTW W

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_03152.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009115670.1	1e-110	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_009115671.1	1e-110	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_009115672.1	1e-110	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_009115673.1	1e-110	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_009115674.1	1e-110	PREDICTED: telomere repeat-binding factor 3-like
Refseq	XP_013691529.1	1e-110	telomere repeat-binding factor 3-like isoform X1
TrEMBL	A0A397XZ88	1e-108	A0A397XZ88_BRACM; Uncharacterized protein
STRING	Bo8g079140.1	1e-107	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21564	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	7e-60	telomere repeat binding factor 3