PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03168.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 124aa    MW: 14136 Da    PI: 9.3987
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03168.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.4e-136115196
                              EEEE-..-HHHHTT-EE--HHH.HTT................---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHH CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keF 68 
                              f+k+l+ sdv++++rl+l ++ ae+h                       + ++++d++     e+ l+  ++ ++yvl +GW k+F
  Rsa1.0_03168.1_g00001.1   6 FLKTLSASDVGSQSRLMLTRSDAETHivshlseenklaieagR---GVRINIRVYDRNTyTDHEFVLKRMNSTRSYVLNGGWgKKF 88 
                              89*************************9866554444332211...12344555554447888899988999999*******668* PP

                              HHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  69 vkangLkegDfvvFkldgrsefelvvkv 96 
                              v++ gLkeg  + F  ++ +e +l++ +
  Rsa1.0_03168.1_g00001.1  89 VESRGLKEGQKIGFLWNS-DESKLHMYL 115
                              ***************655.455566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-154116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-165122IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.4E-66119IPR003340B3 DNA binding domain
CDDcd100172.65E-176117No hitNo description
PfamPF023623.3E-106113IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MPPYTFLKTL SASDVGSQSR LMLTRSDAET HIVSHLSEEN KLAIEAGRGV RINIRVYDRN  60
TYTDHEFVLK RMNSTRSYVL NGGWGKKFVE SRGLKEGQKI GFLWNSDESK LHMYLLSPPA  120
DEQS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_03168.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469688.11e-88PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A078GQD61e-52A0A078GQD6_BRANA; BnaA02g18980D protein
TrEMBLA0A398ABQ31e-52A0A398ABQ3_BRACM; Uncharacterized protein
TrEMBLM4CVX71e-52M4CVX7_BRARP; Uncharacterized protein
STRINGBra008374.1-P2e-53(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-21B3 family protein